Cluster: HRGMv2_0797_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0797
- CGC Family ID: CGCFAM_00560
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0797_24 | HRGMv2_0797_24_8 | 9942 | 11948 | + | GH97 |
| STP | HRGMv2_0797_24 | HRGMv2_0797_24_9 | 11973 | 13418 | + | SBP_bac_1 |
| TC | HRGMv2_0797_24 | HRGMv2_0797_24_10 | 13432 | 14478 | + | 3.A.1.1.20 |
| TC | HRGMv2_0797_24 | HRGMv2_0797_24_11 | 14465 | 15385 | + | 3.A.1.1.36 |
| TC | HRGMv2_0797_24 | HRGMv2_0797_24_12 | 15404 | 17179 | + | 3.A.1.1.27 |
Gene ID: HRGMv2_0797_24_8
Type: CAZyme
Location: 9942 - 11948 (+)
Type: CAZyme
Location: 9942 - 11948 (+)
Gene ID: HRGMv2_0797_24_9
Type: STP
Location: 11973 - 13418 (+)
Type: STP
Location: 11973 - 13418 (+)
Gene ID: HRGMv2_0797_24_10
Type: TC
Location: 13432 - 14478 (+)
Type: TC
Location: 13432 - 14478 (+)
Gene ID: HRGMv2_0797_24_11
Type: TC
Location: 14465 - 15385 (+)
Type: TC
Location: 14465 - 15385 (+)
Gene ID: HRGMv2_0797_24_12
Type: TC
Location: 15404 - 17179 (+)
Type: TC
Location: 15404 - 17179 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp900767465
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0797_24_8 | vegetarian > vegan | 20.69285 | 0.01332 |
| HRGMv2_0797_24_10 | vegetarian > vegan | 20.72101 | 0.01332 |
| HRGMv2_0797_24_11 | vegetarian > vegan | 21.12621 | 0.01332 |