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Cluster: HRGMv2_0797_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0797_6 HRGMv2_0797_6_13 14496 15392 - 3.A.1.1.29
TC HRGMv2_0797_6 HRGMv2_0797_6_14 15392 16342 - 3.A.1.1.29
NULL(UNKNOWN) HRGMv2_0797_6 HRGMv2_0797_6_15 16344 18944 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_0797_6 HRGMv2_0797_6_16 19203 19988 + HTH_AraC
TC HRGMv2_0797_6 HRGMv2_0797_6_17 20648 21475 + 3.A.1.132.3
pfam HRGMv2_0797_6 HRGMv2_0797_6_18 21574 21732 + Rubredoxin
CAZyme HRGMv2_0797_6 HRGMv2_0797_6_19 22183 24063 - GH78
CAZyme HRGMv2_0797_6 HRGMv2_0797_6_20 24261 25850 - GH20
CAZyme HRGMv2_0797_6 HRGMv2_0797_6_21 25937 27838 - GH163
Gene ID: HRGMv2_0797_6_13
Type: TC
Location: 14496 - 15392 (-)
Gene ID: HRGMv2_0797_6_14
Type: TC
Location: 15392 - 16342 (-)
Gene ID: HRGMv2_0797_6_15
Type:
Location: 16344 - 18944 (-)
Gene ID: HRGMv2_0797_6_16
Type: TF
Location: 19203 - 19988 (+)
Gene ID: HRGMv2_0797_6_17
Type: TC
Location: 20648 - 21475 (+)
Gene ID: HRGMv2_0797_6_18
Type: pfam
Location: 21574 - 21732 (+)
Gene ID: HRGMv2_0797_6_19
Type: CAZyme
Location: 22183 - 24063 (-)
Gene ID: HRGMv2_0797_6_20
Type: CAZyme
Location: 24261 - 25850 (-)
Gene ID: HRGMv2_0797_6_21
Type: CAZyme
Location: 25937 - 27838 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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