Cluster: HRGMv2_0786_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0786
- CGC Family ID: CGCFAM_03048
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0786_6 | HRGMv2_0786_6_29 | 31031 | 32152 | - | GT4 |
| TC | HRGMv2_0786_6 | HRGMv2_0786_6_30 | 32159 | 32992 | - | 9.B.18.1.2 |
| CAZyme | HRGMv2_0786_6 | HRGMv2_0786_6_31 | 33331 | 35520 | - | GH31 |
| CAZyme | HRGMv2_0786_6 | HRGMv2_0786_6_32 | 35560 | 37548 | - | GH3 |
| pfam | HRGMv2_0786_6 | HRGMv2_0786_6_33 | 37746 | 38726 | + | 2-Hacid_dh | 2-Hacid_dh_C |
| CAZyme | HRGMv2_0786_6 | HRGMv2_0786_6_34 | 38771 | 39835 | - | GH179 |
Gene ID: HRGMv2_0786_6_29
Type: CAZyme
Location: 31031 - 32152 (-)
Type: CAZyme
Location: 31031 - 32152 (-)
Gene ID: HRGMv2_0786_6_30
Type: TC
Location: 32159 - 32992 (-)
Type: TC
Location: 32159 - 32992 (-)
Gene ID: HRGMv2_0786_6_31
Type: CAZyme
Location: 33331 - 35520 (-)
Type: CAZyme
Location: 33331 - 35520 (-)
Gene ID: HRGMv2_0786_6_32
Type: CAZyme
Location: 35560 - 37548 (-)
Type: CAZyme
Location: 35560 - 37548 (-)
Gene ID: HRGMv2_0786_6_33
Type: pfam
Location: 37746 - 38726 (+)
Type: pfam
Location: 37746 - 38726 (+)
Gene ID: HRGMv2_0786_6_34
Type: CAZyme
Location: 38771 - 39835 (-)
Type: CAZyme
Location: 38771 - 39835 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Gallimonas
Species
Gallimonas merdae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.