Cluster: HRGMv2_0786_CGC4
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0786
- CGC Family ID: CGCFAM_07290
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0786_6 | HRGMv2_0786_6_15 | 15814 | 17583 | - | 2.A.66.1.40 |
| pfam | HRGMv2_0786_6 | HRGMv2_0786_6_16 | 17615 | 18841 | - | Glycos_transf_1 | Glyco_trans_1_2 | Glyco_trans_1_4 |
| pfam | HRGMv2_0786_6 | HRGMv2_0786_6_17 | 18851 | 19876 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | HRGMv2_0786_6 | HRGMv2_0786_6_18 | 19888 | 20811 | - | GT2 |
| pfam | HRGMv2_0786_6 | HRGMv2_0786_6_19 | 20825 | 21688 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | HRGMv2_0786_6 | HRGMv2_0786_6_20 | 21685 | 22251 | - | dTDP_sugar_isom |
| CAZyme | HRGMv2_0786_6 | HRGMv2_0786_6_21 | 22270 | 23211 | - | GT2 |
| pfam | HRGMv2_0786_6 | HRGMv2_0786_6_22 | 23222 | 24106 | - | NTP_transferase | NTP_transf_3 |
| CAZyme | HRGMv2_0786_6 | HRGMv2_0786_6_23 | 24125 | 24877 | - | GT32 |
| NULL(UNKNOWN) | HRGMv2_0786_6 | HRGMv2_0786_6_24 | 24867 | 26180 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0786_6 | HRGMv2_0786_6_25 | 26180 | 27211 | - | GT4 |
Gene ID: HRGMv2_0786_6_15
Type: TC
Location: 15814 - 17583 (-)
Type: TC
Location: 15814 - 17583 (-)
Gene ID: HRGMv2_0786_6_16
Type: pfam
Location: 17615 - 18841 (-)
Type: pfam
Location: 17615 - 18841 (-)
Gene ID: HRGMv2_0786_6_17
Type: pfam
Location: 18851 - 19876 (-)
Type: pfam
Location: 18851 - 19876 (-)
Gene ID: HRGMv2_0786_6_18
Type: CAZyme
Location: 19888 - 20811 (-)
Type: CAZyme
Location: 19888 - 20811 (-)
Gene ID: HRGMv2_0786_6_19
Type: pfam
Location: 20825 - 21688 (-)
Type: pfam
Location: 20825 - 21688 (-)
Gene ID: HRGMv2_0786_6_20
Type: pfam
Location: 21685 - 22251 (-)
Type: pfam
Location: 21685 - 22251 (-)
Gene ID: HRGMv2_0786_6_21
Type: CAZyme
Location: 22270 - 23211 (-)
Type: CAZyme
Location: 22270 - 23211 (-)
Gene ID: HRGMv2_0786_6_22
Type: pfam
Location: 23222 - 24106 (-)
Type: pfam
Location: 23222 - 24106 (-)
Gene ID: HRGMv2_0786_6_23
Type: CAZyme
Location: 24125 - 24877 (-)
Type: CAZyme
Location: 24125 - 24877 (-)
Gene ID: HRGMv2_0786_6_24
Type:
Location: 24867 - 26180 (-)
Type:
Location: 24867 - 26180 (-)
Gene ID: HRGMv2_0786_6_25
Type: CAZyme
Location: 26180 - 27211 (-)
Type: CAZyme
Location: 26180 - 27211 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Gallimonas
Species
Gallimonas merdae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.