Cluster: HRGMv2_0786_CGC29
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0786
- CGC Family ID: CGCFAM_02160
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0786_40 | HRGMv2_0786_40_1 | 140 | 1873 | - | GH2 |
| CAZyme | HRGMv2_0786_40 | HRGMv2_0786_40_2 | 1897 | 4308 | - | GH43_32 |
| CAZyme | HRGMv2_0786_40 | HRGMv2_0786_40_3 | 4406 | 6907 | - | CBM66 | GH43_32 |
| pfam | HRGMv2_0786_40 | HRGMv2_0786_40_4 | 6920 | 10723 | - | CBM9_1 | CarboxypepD_reg | CarboxypepD_reg | CarboxypepD_reg |
| TC | HRGMv2_0786_40 | HRGMv2_0786_40_5 | 10753 | 11631 | - | 3.A.1.1.34 |
| TC | HRGMv2_0786_40 | HRGMv2_0786_40_6 | 11636 | 12583 | - | 3.A.1.1.20 |
Gene ID: HRGMv2_0786_40_1
Type: CAZyme
Location: 140 - 1873 (-)
Type: CAZyme
Location: 140 - 1873 (-)
Gene ID: HRGMv2_0786_40_2
Type: CAZyme
Location: 1897 - 4308 (-)
Type: CAZyme
Location: 1897 - 4308 (-)
Gene ID: HRGMv2_0786_40_3
Type: CAZyme
Location: 4406 - 6907 (-)
Type: CAZyme
Location: 4406 - 6907 (-)
Gene ID: HRGMv2_0786_40_4
Type: pfam
Location: 6920 - 10723 (-)
Type: pfam
Location: 6920 - 10723 (-)
Gene ID: HRGMv2_0786_40_5
Type: TC
Location: 10753 - 11631 (-)
Type: TC
Location: 10753 - 11631 (-)
Gene ID: HRGMv2_0786_40_6
Type: TC
Location: 11636 - 12583 (-)
Type: TC
Location: 11636 - 12583 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Gallimonas
Species
Gallimonas merdae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.