Cluster: HRGMv2_0786_CGC22
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0786
- CGC Family ID: CGCFAM_00448
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0786_22 | HRGMv2_0786_22_3 | 3626 | 5314 | + | GH28 |
| TC | HRGMv2_0786_22 | HRGMv2_0786_22_4 | 5335 | 6360 | + | 3.A.1.1.10 |
| TC | HRGMv2_0786_22 | HRGMv2_0786_22_5 | 6372 | 7307 | + | 3.A.1.1.10 |
| CAZyme | HRGMv2_0786_22 | HRGMv2_0786_22_6 | 7341 | 9482 | + | GH36 |
| CAZyme | HRGMv2_0786_22 | HRGMv2_0786_22_7 | 9486 | 10319 | + | GH43_17 |
| NULL(UNKNOWN) | HRGMv2_0786_22 | HRGMv2_0786_22_8 | 10451 | 10918 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0786_22 | HRGMv2_0786_22_9 | 11555 | 12925 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0786_22 | HRGMv2_0786_22_10 | 12943 | 16521 | + | GH89 |
| NULL(UNKNOWN) | HRGMv2_0786_22 | HRGMv2_0786_22_11 | 16552 | 19167 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0786_22 | HRGMv2_0786_22_12 | 19268 | 20068 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_0786_22 | HRGMv2_0786_22_13 | 20263 | 21249 | + | 3.A.1.1.10 |
| TC | HRGMv2_0786_22 | HRGMv2_0786_22_14 | 21249 | 22115 | + | 3.A.1.1.29 |
Gene ID: HRGMv2_0786_22_3
Type: CAZyme
Location: 3626 - 5314 (+)
Type: CAZyme
Location: 3626 - 5314 (+)
Gene ID: HRGMv2_0786_22_4
Type: TC
Location: 5335 - 6360 (+)
Type: TC
Location: 5335 - 6360 (+)
Gene ID: HRGMv2_0786_22_5
Type: TC
Location: 6372 - 7307 (+)
Type: TC
Location: 6372 - 7307 (+)
Gene ID: HRGMv2_0786_22_6
Type: CAZyme
Location: 7341 - 9482 (+)
Type: CAZyme
Location: 7341 - 9482 (+)
Gene ID: HRGMv2_0786_22_7
Type: CAZyme
Location: 9486 - 10319 (+)
Type: CAZyme
Location: 9486 - 10319 (+)
Gene ID: HRGMv2_0786_22_8
Type:
Location: 10451 - 10918 (-)
Type:
Location: 10451 - 10918 (-)
Gene ID: HRGMv2_0786_22_9
Type:
Location: 11555 - 12925 (+)
Type:
Location: 11555 - 12925 (+)
Gene ID: HRGMv2_0786_22_10
Type: CAZyme
Location: 12943 - 16521 (+)
Type: CAZyme
Location: 12943 - 16521 (+)
Gene ID: HRGMv2_0786_22_11
Type:
Location: 16552 - 19167 (+)
Type:
Location: 16552 - 19167 (+)
Gene ID: HRGMv2_0786_22_12
Type: TF
Location: 19268 - 20068 (-)
Type: TF
Location: 19268 - 20068 (-)
Gene ID: HRGMv2_0786_22_13
Type: TC
Location: 20263 - 21249 (+)
Type: TC
Location: 20263 - 21249 (+)
Gene ID: HRGMv2_0786_22_14
Type: TC
Location: 21249 - 22115 (+)
Type: TC
Location: 21249 - 22115 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Gallimonas
Species
Gallimonas merdae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.