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Cluster: HRGMv2_0783_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0783_48 HRGMv2_0783_48_9 7812 8957 - GH27
TF HRGMv2_0783_48 HRGMv2_0783_48_10 9052 9867 + HTH_AraC | HTH_AraC
NULL(UNKNOWN) HRGMv2_0783_48 HRGMv2_0783_48_11 9999 10655 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0783_48 HRGMv2_0783_48_12 11383 12921 - 2.A.40.7.6
TC HRGMv2_0783_48 HRGMv2_0783_48_13 13342 15444 - 3.A.3.6.10
TF HRGMv2_0783_48 HRGMv2_0783_48_14 15449 15817 - HTH_5
pfam HRGMv2_0783_48 HRGMv2_0783_48_15 15987 16817 - PseudoU_synth_2
TC HRGMv2_0783_48 HRGMv2_0783_48_16 16765 18618 - 9.A.8.1.2
Gene ID: HRGMv2_0783_48_9
Type: CAZyme
Location: 7812 - 8957 (-)
Gene ID: HRGMv2_0783_48_10
Type: TF
Location: 9052 - 9867 (+)
Gene ID: HRGMv2_0783_48_11
Type:
Location: 9999 - 10655 (-)
Gene ID: HRGMv2_0783_48_12
Type: TC
Location: 11383 - 12921 (-)
Gene ID: HRGMv2_0783_48_13
Type: TC
Location: 13342 - 15444 (-)
Gene ID: HRGMv2_0783_48_14
Type: TF
Location: 15449 - 15817 (-)
Gene ID: HRGMv2_0783_48_15
Type: pfam
Location: 15987 - 16817 (-)
Gene ID: HRGMv2_0783_48_16
Type: TC
Location: 16765 - 18618 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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