Cluster: HRGMv2_0780_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0780
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0780_7 | HRGMv2_0780_7_27 | 31968 | 34565 | + | 3.A.9.1.2 |
| TF | HRGMv2_0780_7 | HRGMv2_0780_7_28 | 34830 | 35783 | - | 0043095 |
| TC | HRGMv2_0780_7 | HRGMv2_0780_7_29 | 35988 | 37649 | + | 3.A.1.1.9 |
| TC | HRGMv2_0780_7 | HRGMv2_0780_7_30 | 37666 | 38640 | + | 3.A.1.1.9 |
| TC | HRGMv2_0780_7 | HRGMv2_0780_7_31 | 38649 | 39560 | + | 3.A.1.1.9 |
| CAZyme | HRGMv2_0780_7 | HRGMv2_0780_7_32 | 39574 | 41133 | + | GH43_33 |
| CAZyme | HRGMv2_0780_7 | HRGMv2_0780_7_33 | 41148 | 42209 | + | GH5_13 |
Gene ID: HRGMv2_0780_7_27
Type: TC
Location: 31968 - 34565 (+)
Type: TC
Location: 31968 - 34565 (+)
Gene ID: HRGMv2_0780_7_28
Type: TF
Location: 34830 - 35783 (-)
Type: TF
Location: 34830 - 35783 (-)
Gene ID: HRGMv2_0780_7_29
Type: TC
Location: 35988 - 37649 (+)
Type: TC
Location: 35988 - 37649 (+)
Gene ID: HRGMv2_0780_7_30
Type: TC
Location: 37666 - 38640 (+)
Type: TC
Location: 37666 - 38640 (+)
Gene ID: HRGMv2_0780_7_31
Type: TC
Location: 38649 - 39560 (+)
Type: TC
Location: 38649 - 39560 (+)
Gene ID: HRGMv2_0780_7_32
Type: CAZyme
Location: 39574 - 41133 (+)
Type: CAZyme
Location: 39574 - 41133 (+)
Gene ID: HRGMv2_0780_7_33
Type: CAZyme
Location: 41148 - 42209 (+)
Type: CAZyme
Location: 41148 - 42209 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Gallimonas
Species
Gallimonas caecicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.