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Cluster: HRGMv2_0780_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0780_20 HRGMv2_0780_20_1 1 1038 - 3.D.1.5.1
TC HRGMv2_0780_20 HRGMv2_0780_20_2 1035 1535 - 3.D.1.5.1
CAZyme HRGMv2_0780_20 HRGMv2_0780_20_3 1877 4180 + GT35
STP HRGMv2_0780_20 HRGMv2_0780_20_4 4577 5479 + LysR_substrate
TC HRGMv2_0780_20 HRGMv2_0780_20_5 5566 7410 + 3.A.1.7.5
TC HRGMv2_0780_20 HRGMv2_0780_20_6 7420 8295 + 3.A.1.7.5
pfam HRGMv2_0780_20 HRGMv2_0780_20_7 8494 9150 + PhoU | PhoU
TC HRGMv2_0780_20 HRGMv2_0780_20_8 9264 10967 + 2.A.58.2.2
TF HRGMv2_0780_20 HRGMv2_0780_20_9 10971 11621 + Trans_reg_C
STP HRGMv2_0780_20 HRGMv2_0780_20_10 11665 13038 + HATPase_c | HisKA
CAZyme HRGMv2_0780_20 HRGMv2_0780_20_11 13144 15072 + GH51_2
Gene ID: HRGMv2_0780_20_1
Type: TC
Location: 1 - 1038 (-)
Gene ID: HRGMv2_0780_20_2
Type: TC
Location: 1035 - 1535 (-)
Gene ID: HRGMv2_0780_20_3
Type: CAZyme
Location: 1877 - 4180 (+)
Gene ID: HRGMv2_0780_20_4
Type: STP
Location: 4577 - 5479 (+)
Gene ID: HRGMv2_0780_20_5
Type: TC
Location: 5566 - 7410 (+)
Gene ID: HRGMv2_0780_20_6
Type: TC
Location: 7420 - 8295 (+)
Gene ID: HRGMv2_0780_20_7
Type: pfam
Location: 8494 - 9150 (+)
Gene ID: HRGMv2_0780_20_8
Type: TC
Location: 9264 - 10967 (+)
Gene ID: HRGMv2_0780_20_9
Type: TF
Location: 10971 - 11621 (+)
Gene ID: HRGMv2_0780_20_10
Type: STP
Location: 11665 - 13038 (+)
Gene ID: HRGMv2_0780_20_11
Type: CAZyme
Location: 13144 - 15072 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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