Cluster: HRGMv2_0770_CGC4
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0770
- CGC Family ID: CGCFAM_09760
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0770_2 | HRGMv2_0770_2_103 | 106542 | 108542 | - | 9.B.18.2.1 |
| STP | HRGMv2_0770_2 | HRGMv2_0770_2_104 | 108853 | 109974 | - | Fer4 |
| TF | HRGMv2_0770_2 | HRGMv2_0770_2_105 | 109987 | 111015 | - | LacI |
| TC | HRGMv2_0770_2 | HRGMv2_0770_2_106 | 111362 | 112624 | + | 2.A.39.1.1 |
| pfam | HRGMv2_0770_2 | HRGMv2_0770_2_107 | 112829 | 114175 | + | ELFV_dehydrog | ELFV_dehydrog_N |
| TF | HRGMv2_0770_2 | HRGMv2_0770_2_108 | 114274 | 114876 | - | HTH_3 |
| TC | HRGMv2_0770_2 | HRGMv2_0770_2_109 | 115216 | 117867 | + | 3.A.3.2.21 |
| pfam | HRGMv2_0770_2 | HRGMv2_0770_2_110 | 118164 | 118661 | - | Acetyltransf_1 | Acetyltransf_3 | Acetyltransf_7 | Acetyltransf_10 |
| TC | HRGMv2_0770_2 | HRGMv2_0770_2_111 | 119726 | 120457 | - | 1.A.23.3.1 |
| CAZyme | HRGMv2_0770_2 | HRGMv2_0770_2_112 | 120905 | 122653 | - | GH2 |
| TC | HRGMv2_0770_2 | HRGMv2_0770_2_113 | 122650 | 123927 | - | 2.A.1.84.3 |
| TC | HRGMv2_0770_2 | HRGMv2_0770_2_114 | 123946 | 125115 | - | 2.A.4.7.4 |
Gene ID: HRGMv2_0770_2_103
Type: TC
Location: 106542 - 108542 (-)
Type: TC
Location: 106542 - 108542 (-)
Gene ID: HRGMv2_0770_2_104
Type: STP
Location: 108853 - 109974 (-)
Type: STP
Location: 108853 - 109974 (-)
Gene ID: HRGMv2_0770_2_105
Type: TF
Location: 109987 - 111015 (-)
Type: TF
Location: 109987 - 111015 (-)
Gene ID: HRGMv2_0770_2_106
Type: TC
Location: 111362 - 112624 (+)
Type: TC
Location: 111362 - 112624 (+)
Gene ID: HRGMv2_0770_2_107
Type: pfam
Location: 112829 - 114175 (+)
Type: pfam
Location: 112829 - 114175 (+)
Gene ID: HRGMv2_0770_2_108
Type: TF
Location: 114274 - 114876 (-)
Type: TF
Location: 114274 - 114876 (-)
Gene ID: HRGMv2_0770_2_109
Type: TC
Location: 115216 - 117867 (+)
Type: TC
Location: 115216 - 117867 (+)
Gene ID: HRGMv2_0770_2_110
Type: pfam
Location: 118164 - 118661 (-)
Type: pfam
Location: 118164 - 118661 (-)
Gene ID: HRGMv2_0770_2_111
Type: TC
Location: 119726 - 120457 (-)
Type: TC
Location: 119726 - 120457 (-)
Gene ID: HRGMv2_0770_2_112
Type: CAZyme
Location: 120905 - 122653 (-)
Type: CAZyme
Location: 120905 - 122653 (-)
Gene ID: HRGMv2_0770_2_113
Type: TC
Location: 122650 - 123927 (-)
Type: TC
Location: 122650 - 123927 (-)
Gene ID: HRGMv2_0770_2_114
Type: TC
Location: 123946 - 125115 (-)
Type: TC
Location: 123946 - 125115 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
CAG-138
Genus
Aphodomorpha
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.