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Cluster: HRGMv2_0770_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0770_54 HRGMv2_0770_54_6 6227 7162 + 3.A.1.1.34
TC HRGMv2_0770_54 HRGMv2_0770_54_7 7159 8043 + 3.A.1.1.34
CAZyme HRGMv2_0770_54 HRGMv2_0770_54_8 8047 9696 + GH66
TF HRGMv2_0770_54 HRGMv2_0770_54_9 9704 10621 + HTH_AraC
pfam HRGMv2_0770_54 HRGMv2_0770_54_10 10618 11277 + DUF624
CAZyme HRGMv2_0770_54 HRGMv2_0770_54_11 11274 12926 + GH13_31
Gene ID: HRGMv2_0770_54_6
Type: TC
Location: 6227 - 7162 (+)
Gene ID: HRGMv2_0770_54_7
Type: TC
Location: 7159 - 8043 (+)
Gene ID: HRGMv2_0770_54_8
Type: CAZyme
Location: 8047 - 9696 (+)
Gene ID: HRGMv2_0770_54_9
Type: TF
Location: 9704 - 10621 (+)
Gene ID: HRGMv2_0770_54_10
Type: pfam
Location: 10618 - 11277 (+)
Gene ID: HRGMv2_0770_54_11
Type: CAZyme
Location: 11274 - 12926 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Christensenellales
→
Family
CAG-138
→
Genus
Aphodomorpha
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0770_54_6 vegetarian > vegan 1.22256 0.00455

🧭 Explore Read Mapping of CGC

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