Cluster: HRGMv2_0770_CGC11
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0770
- CGC Family ID: CGCFAM_04709
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0770_17 | HRGMv2_0770_17_6 | 4567 | 6327 | - | 3.A.1.20.1 |
| TC | HRGMv2_0770_17 | HRGMv2_0770_17_7 | 6320 | 7426 | - | 3.A.1.20.1 |
| TC | HRGMv2_0770_17 | HRGMv2_0770_17_8 | 7499 | 8626 | - | 3.A.1.20.2 |
| TF | HRGMv2_0770_17 | HRGMv2_0770_17_9 | 8998 | 9966 | - | HTH_AraC | HTH_AraC |
| pfam | HRGMv2_0770_17 | HRGMv2_0770_17_10 | 10184 | 10942 | + | Glucosamine_iso |
| CAZyme | HRGMv2_0770_17 | HRGMv2_0770_17_11 | 10955 | 12127 | + | CE9 |
| CAZyme | HRGMv2_0770_17 | HRGMv2_0770_17_12 | 12152 | 13327 | + | CE9 |
| CAZyme | HRGMv2_0770_17 | HRGMv2_0770_17_13 | 13331 | 14524 | + | CE9 |
| pfam | HRGMv2_0770_17 | HRGMv2_0770_17_14 | 14546 | 15304 | + | SIS_2 |
| pfam | HRGMv2_0770_17 | HRGMv2_0770_17_15 | 15392 | 16681 | + | GlcNAc_2-epim |
| CAZyme | HRGMv2_0770_17 | HRGMv2_0770_17_16 | 16988 | 17986 | + | GH179 |
Gene ID: HRGMv2_0770_17_6
Type: TC
Location: 4567 - 6327 (-)
Type: TC
Location: 4567 - 6327 (-)
Gene ID: HRGMv2_0770_17_7
Type: TC
Location: 6320 - 7426 (-)
Type: TC
Location: 6320 - 7426 (-)
Gene ID: HRGMv2_0770_17_8
Type: TC
Location: 7499 - 8626 (-)
Type: TC
Location: 7499 - 8626 (-)
Gene ID: HRGMv2_0770_17_9
Type: TF
Location: 8998 - 9966 (-)
Type: TF
Location: 8998 - 9966 (-)
Gene ID: HRGMv2_0770_17_10
Type: pfam
Location: 10184 - 10942 (+)
Type: pfam
Location: 10184 - 10942 (+)
Gene ID: HRGMv2_0770_17_11
Type: CAZyme
Location: 10955 - 12127 (+)
Type: CAZyme
Location: 10955 - 12127 (+)
Gene ID: HRGMv2_0770_17_12
Type: CAZyme
Location: 12152 - 13327 (+)
Type: CAZyme
Location: 12152 - 13327 (+)
Gene ID: HRGMv2_0770_17_13
Type: CAZyme
Location: 13331 - 14524 (+)
Type: CAZyme
Location: 13331 - 14524 (+)
Gene ID: HRGMv2_0770_17_14
Type: pfam
Location: 14546 - 15304 (+)
Type: pfam
Location: 14546 - 15304 (+)
Gene ID: HRGMv2_0770_17_15
Type: pfam
Location: 15392 - 16681 (+)
Type: pfam
Location: 15392 - 16681 (+)
Gene ID: HRGMv2_0770_17_16
Type: CAZyme
Location: 16988 - 17986 (+)
Type: CAZyme
Location: 16988 - 17986 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
CAG-138
Genus
Aphodomorpha
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.