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Cluster: HRGMv2_0744_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0744_1 HRGMv2_0744_1_593 708674 709552 - 3.A.1.1.29
TC HRGMv2_0744_1 HRGMv2_0744_1_594 709549 710523 - 3.A.1.1.10
TF HRGMv2_0744_1 HRGMv2_0744_1_595 710676 711479 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_0744_1 HRGMv2_0744_1_596 711492 713237 - GH2
CAZyme HRGMv2_0744_1 HRGMv2_0744_1_597 713334 716360 - GH43
TC HRGMv2_0744_1 HRGMv2_0744_1_598 716436 717344 - 3.A.1.1.11
TC HRGMv2_0744_1 HRGMv2_0744_1_599 717337 718302 - 3.A.1.1.23
Gene ID: HRGMv2_0744_1_593
Type: TC
Location: 708674 - 709552 (-)
Gene ID: HRGMv2_0744_1_594
Type: TC
Location: 709549 - 710523 (-)
Gene ID: HRGMv2_0744_1_595
Type: TF
Location: 710676 - 711479 (+)
Gene ID: HRGMv2_0744_1_596
Type: CAZyme
Location: 711492 - 713237 (-)
Gene ID: HRGMv2_0744_1_597
Type: CAZyme
Location: 713334 - 716360 (-)
Gene ID: HRGMv2_0744_1_598
Type: TC
Location: 716436 - 717344 (-)
Gene ID: HRGMv2_0744_1_599
Type: TC
Location: 717337 - 718302 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0744_1_596 vegan > omnivore 1.83803 0.03539
HRGMv2_0744_1_598 vegan > omnivore 2.46363 0.02361
HRGMv2_0744_1_598 vegetarian > omnivore 1.71254 0.02100
HRGMv2_0744_1_599 vegan > omnivore 1.66610 0.03539
HRGMv2_0744_1_599 vegetarian > omnivore 1.48305 0.02100

🧭 Explore Read Mapping of CGC

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