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Cluster: HRGMv2_0744_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0744_1 HRGMv2_0744_1_38 38755 39507 - 9.B.143.2.3
TF HRGMv2_0744_1 HRGMv2_0744_1_39 39741 40634 + HTH_1
pfam HRGMv2_0744_1 HRGMv2_0744_1_40 40748 41437 + RelA_SpoT
TC HRGMv2_0744_1 HRGMv2_0744_1_41 41434 42462 + 3.A.11.1.3
TC HRGMv2_0744_1 HRGMv2_0744_1_42 42521 43597 - 2.A.115.1.5
CAZyme HRGMv2_0744_1 HRGMv2_0744_1_43 44138 45307 - GT4
NULL(UNKNOWN) HRGMv2_0744_1 HRGMv2_0744_1_44 45459 45779 + NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_0744_1 HRGMv2_0744_1_45 45860 49480 - Fer4 | Fer4
TC HRGMv2_0744_1 HRGMv2_0744_1_46 49833 51917 + 3.A.1.26.7
TC HRGMv2_0744_1 HRGMv2_0744_1_47 51910 52722 + 3.A.1.26.10
Gene ID: HRGMv2_0744_1_38
Type: TC
Location: 38755 - 39507 (-)
Gene ID: HRGMv2_0744_1_39
Type: TF
Location: 39741 - 40634 (+)
Gene ID: HRGMv2_0744_1_40
Type: pfam
Location: 40748 - 41437 (+)
Gene ID: HRGMv2_0744_1_41
Type: TC
Location: 41434 - 42462 (+)
Gene ID: HRGMv2_0744_1_42
Type: TC
Location: 42521 - 43597 (-)
Gene ID: HRGMv2_0744_1_43
Type: CAZyme
Location: 44138 - 45307 (-)
Gene ID: HRGMv2_0744_1_44
Type:
Location: 45459 - 45779 (+)
Gene ID: HRGMv2_0744_1_45
Type: STP
Location: 45860 - 49480 (-)
Gene ID: HRGMv2_0744_1_46
Type: TC
Location: 49833 - 51917 (+)
Gene ID: HRGMv2_0744_1_47
Type: TC
Location: 51910 - 52722 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0744_1_40 vegan > omnivore 1.29519 0.03539
HRGMv2_0744_1_42 vegetarian > omnivore 1.10386 0.02100

🧭 Explore Read Mapping of CGC

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