Cluster: HRGMv2_0735_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_05421
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0735_5 | HRGMv2_0735_5_2 | 1136 | 3373 | + | GH3 |
| TC | HRGMv2_0735_5 | HRGMv2_0735_5_3 | 3440 | 4213 | - | 3.A.1.34.1 |
| TC | HRGMv2_0735_5 | HRGMv2_0735_5_4 | 4206 | 5084 | - | 3.A.1.34.1 |
| pfam | HRGMv2_0735_5 | HRGMv2_0735_5_5 | 5199 | 6179 | - | ABC_sub_bind |
| NULL(UNKNOWN) | HRGMv2_0735_5 | HRGMv2_0735_5_6 | 6568 | 6957 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0735_5 | HRGMv2_0735_5_7 | 7091 | 7870 | + | CE1 |
| TC | HRGMv2_0735_5 | HRGMv2_0735_5_8 | 7876 | 8697 | + | 1.C.109.1.5 |
Gene ID: HRGMv2_0735_5_2
Type: CAZyme
Location: 1136 - 3373 (+)
Type: CAZyme
Location: 1136 - 3373 (+)
Gene ID: HRGMv2_0735_5_3
Type: TC
Location: 3440 - 4213 (-)
Type: TC
Location: 3440 - 4213 (-)
Gene ID: HRGMv2_0735_5_4
Type: TC
Location: 4206 - 5084 (-)
Type: TC
Location: 4206 - 5084 (-)
Gene ID: HRGMv2_0735_5_5
Type: pfam
Location: 5199 - 6179 (-)
Type: pfam
Location: 5199 - 6179 (-)
Gene ID: HRGMv2_0735_5_6
Type:
Location: 6568 - 6957 (-)
Type:
Location: 6568 - 6957 (-)
Gene ID: HRGMv2_0735_5_7
Type: CAZyme
Location: 7091 - 7870 (+)
Type: CAZyme
Location: 7091 - 7870 (+)
Gene ID: HRGMv2_0735_5_8
Type: TC
Location: 7876 - 8697 (+)
Type: TC
Location: 7876 - 8697 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_5_2 | vegetarian > omnivore | 1.67677 | 0.00143 |
| HRGMv2_0735_5_4 | vegetarian > omnivore | 1.99899 | 0.00143 |
| HRGMv2_0735_5_5 | vegan > omnivore | 1.19416 | 0.02892 |
| HRGMv2_0735_5_6 | vegetarian > omnivore | 1.57802 | 0.00143 |
| HRGMv2_0735_5_7 | vegetarian > omnivore | 2.27220 | 0.00143 |
| HRGMv2_0735_5_8 | vegetarian > omnivore | 1.08485 | 0.00143 |