Cluster: HRGMv2_0735_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0735
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0735_4 | HRGMv2_0735_4_9 | 8761 | 10470 | + | 3.A.1.1.9 |
| TC | HRGMv2_0735_4 | HRGMv2_0735_4_10 | 10541 | 11476 | + | 3.A.1.1.9 |
| TC | HRGMv2_0735_4 | HRGMv2_0735_4_11 | 11513 | 12439 | + | 3.A.1.1.9 |
| STP | HRGMv2_0735_4 | HRGMv2_0735_4_12 | 12560 | 13636 | + | Peripla_BP_3 |
| NULL(UNKNOWN) | HRGMv2_0735_4 | HRGMv2_0735_4_13 | 13719 | 14819 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0735_4 | HRGMv2_0735_4_14 | 15117 | 16778 | + | GH123 |
Gene ID: HRGMv2_0735_4_9
Type: TC
Location: 8761 - 10470 (+)
Type: TC
Location: 8761 - 10470 (+)
Gene ID: HRGMv2_0735_4_10
Type: TC
Location: 10541 - 11476 (+)
Type: TC
Location: 10541 - 11476 (+)
Gene ID: HRGMv2_0735_4_11
Type: TC
Location: 11513 - 12439 (+)
Type: TC
Location: 11513 - 12439 (+)
Gene ID: HRGMv2_0735_4_12
Type: STP
Location: 12560 - 13636 (+)
Type: STP
Location: 12560 - 13636 (+)
Gene ID: HRGMv2_0735_4_13
Type:
Location: 13719 - 14819 (-)
Type:
Location: 13719 - 14819 (-)
Gene ID: HRGMv2_0735_4_14
Type: CAZyme
Location: 15117 - 16778 (+)
Type: CAZyme
Location: 15117 - 16778 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_4_9 | vegetarian > omnivore | 1.30418 | 0.00143 |
| HRGMv2_0735_4_10 | vegetarian > omnivore | 1.21352 | 0.00143 |
| HRGMv2_0735_4_14 | vegetarian > omnivore | 2.79235 | 0.00143 |