Cluster: HRGMv2_0735_CGC58
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0735
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0735_235 | HRGMv2_0735_235_1 | 3 | 1472 | - | GH78 |
| NULL(UNKNOWN) | HRGMv2_0735_235 | HRGMv2_0735_235_2 | 1583 | 2398 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0735_235 | HRGMv2_0735_235_3 | 2391 | 3302 | - | 3.A.1.128.2 |
Gene ID: HRGMv2_0735_235_1
Type: CAZyme
Location: 3 - 1472 (-)
Type: CAZyme
Location: 3 - 1472 (-)
Gene ID: HRGMv2_0735_235_2
Type:
Location: 1583 - 2398 (-)
Type:
Location: 1583 - 2398 (-)
Gene ID: HRGMv2_0735_235_3
Type: TC
Location: 2391 - 3302 (-)
Type: TC
Location: 2391 - 3302 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_235_1 | vegetarian > omnivore | 1.47145 | 0.00143 |
| HRGMv2_0735_235_2 | vegetarian > omnivore | 2.19981 | 0.00143 |
| HRGMv2_0735_235_3 | vegetarian > omnivore | 1.69934 | 0.00143 |
| HRGMv2_0735_235_3 | vegetarian > vegan | 1.18899 | 0.00608 |