Cluster: HRGMv2_0735_CGC52
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_05128
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0735_179 | HRGMv2_0735_179_1 | 2 | 409 | - | GH35 |
| TC | HRGMv2_0735_179 | HRGMv2_0735_179_2 | 467 | 1303 | - | 3.A.1.1.11 |
| TC | HRGMv2_0735_179 | HRGMv2_0735_179_3 | 1317 | 2207 | - | 3.A.1.1.11 |
Gene ID: HRGMv2_0735_179_1
Type: CAZyme
Location: 2 - 409 (-)
Type: CAZyme
Location: 2 - 409 (-)
Gene ID: HRGMv2_0735_179_2
Type: TC
Location: 467 - 1303 (-)
Type: TC
Location: 467 - 1303 (-)
Gene ID: HRGMv2_0735_179_3
Type: TC
Location: 1317 - 2207 (-)
Type: TC
Location: 1317 - 2207 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_179_1 | vegetarian > omnivore | 2.48498 | 0.00143 |
| HRGMv2_0735_179_2 | vegetarian > omnivore | 1.74576 | 0.00143 |
| HRGMv2_0735_179_3 | vegetarian > omnivore | 1.99015 | 0.00143 |