Cluster: HRGMv2_0735_CGC51
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_00466
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0735_177 | HRGMv2_0735_177_2 | 1648 | 3099 | + | 2.A.2.3.6 |
| pfam | HRGMv2_0735_177 | HRGMv2_0735_177_3 | 3103 | 3858 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_0735_177 | HRGMv2_0735_177_4 | 3861 | 5519 | + | CBM67 | GH78 |
Gene ID: HRGMv2_0735_177_2
Type: TC
Location: 1648 - 3099 (+)
Type: TC
Location: 1648 - 3099 (+)
Gene ID: HRGMv2_0735_177_3
Type: pfam
Location: 3103 - 3858 (+)
Type: pfam
Location: 3103 - 3858 (+)
Gene ID: HRGMv2_0735_177_4
Type: CAZyme
Location: 3861 - 5519 (+)
Type: CAZyme
Location: 3861 - 5519 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_177_2 | vegetarian > omnivore | 1.03114 | 0.00143 |
| HRGMv2_0735_177_4 | vegetarian > omnivore | 1.98053 | 0.00143 |
| HRGMv2_0735_177_4 | vegetarian > vegan | 2.25798 | 0.00608 |