Cluster: HRGMv2_0735_CGC47
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_04233
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0735_136 | HRGMv2_0735_136_2 | 1929 | 3653 | + | GH2 |
| TF | HRGMv2_0735_136 | HRGMv2_0735_136_3 | 3729 | 4718 | + | HTH_AraC |
| TC | HRGMv2_0735_136 | HRGMv2_0735_136_4 | 4708 | 5517 | + | 2.A.79.1.5 |
| pfam | HRGMv2_0735_136 | HRGMv2_0735_136_5 | 5514 | 5957 | + | ThrE | ThrE_2 |
| CAZyme | HRGMv2_0735_136 | HRGMv2_0735_136_6 | 6060 | 7769 | + | GH2 |
Gene ID: HRGMv2_0735_136_2
Type: CAZyme
Location: 1929 - 3653 (+)
Type: CAZyme
Location: 1929 - 3653 (+)
Gene ID: HRGMv2_0735_136_3
Type: TF
Location: 3729 - 4718 (+)
Type: TF
Location: 3729 - 4718 (+)
Gene ID: HRGMv2_0735_136_4
Type: TC
Location: 4708 - 5517 (+)
Type: TC
Location: 4708 - 5517 (+)
Gene ID: HRGMv2_0735_136_5
Type: pfam
Location: 5514 - 5957 (+)
Type: pfam
Location: 5514 - 5957 (+)
Gene ID: HRGMv2_0735_136_6
Type: CAZyme
Location: 6060 - 7769 (+)
Type: CAZyme
Location: 6060 - 7769 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_136_3 | vegetarian > omnivore | 1.91278 | 0.00143 |
| HRGMv2_0735_136_4 | vegetarian > omnivore | 1.11181 | 0.00143 |
| HRGMv2_0735_136_5 | vegetarian > omnivore | 2.50177 | 0.00143 |
| HRGMv2_0735_136_5 | vegetarian > vegan | 1.00680 | 0.00608 |
| HRGMv2_0735_136_6 | vegetarian > omnivore | 1.85944 | 0.00143 |