Cluster: HRGMv2_0735_CGC46
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_01619
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0735_123 | HRGMv2_0735_123_2 | 1247 | 2827 | + | GH35 |
| TC | HRGMv2_0735_123 | HRGMv2_0735_123_3 | 2855 | 5404 | + | 3.A.1.1.29 |
| TC | HRGMv2_0735_123 | HRGMv2_0735_123_4 | 5420 | 6355 | + | 3.A.1.1.29 |
Gene ID: HRGMv2_0735_123_2
Type: CAZyme
Location: 1247 - 2827 (+)
Type: CAZyme
Location: 1247 - 2827 (+)
Gene ID: HRGMv2_0735_123_3
Type: TC
Location: 2855 - 5404 (+)
Type: TC
Location: 2855 - 5404 (+)
Gene ID: HRGMv2_0735_123_4
Type: TC
Location: 5420 - 6355 (+)
Type: TC
Location: 5420 - 6355 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_123_2 | vegetarian > omnivore | 2.21111 | 0.00143 |
| HRGMv2_0735_123_3 | vegetarian > omnivore | 1.20822 | 0.00143 |
| HRGMv2_0735_123_4 | vegetarian > omnivore | 1.19295 | 0.00143 |