Cluster: HRGMv2_0735_CGC44
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_01596
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0735_112 | HRGMv2_0735_112_9 | 5740 | 6855 | - | CE9 |
| STP | HRGMv2_0735_112 | HRGMv2_0735_112_10 | 6884 | 7921 | - | SBP_bac_1 | SBP_bac_1 |
| TC | HRGMv2_0735_112 | HRGMv2_0735_112_11 | 8031 | 8861 | - | 3.A.1.11.1 |
| TC | HRGMv2_0735_112 | HRGMv2_0735_112_12 | 8876 | 9271 | - | 3.A.1.11.1 |
Gene ID: HRGMv2_0735_112_9
Type: CAZyme
Location: 5740 - 6855 (-)
Type: CAZyme
Location: 5740 - 6855 (-)
Gene ID: HRGMv2_0735_112_10
Type: STP
Location: 6884 - 7921 (-)
Type: STP
Location: 6884 - 7921 (-)
Gene ID: HRGMv2_0735_112_11
Type: TC
Location: 8031 - 8861 (-)
Type: TC
Location: 8031 - 8861 (-)
Gene ID: HRGMv2_0735_112_12
Type: TC
Location: 8876 - 9271 (-)
Type: TC
Location: 8876 - 9271 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_112_9 | vegetarian > omnivore | 1.39849 | 0.00143 |
| HRGMv2_0735_112_10 | vegetarian > omnivore | 1.69644 | 0.00143 |
| HRGMv2_0735_112_12 | vegetarian > omnivore | 1.07047 | 0.00143 |