Cluster: HRGMv2_0735_CGC43
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0735
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0735_90 | HRGMv2_0735_90_2 | 935 | 2053 | - | GH179 |
| pfam | HRGMv2_0735_90 | HRGMv2_0735_90_3 | 2292 | 3572 | + | DUF362 | Lar_N | LarA_C |
| STP | HRGMv2_0735_90 | HRGMv2_0735_90_4 | 3589 | 4743 | + | Aminotran_1_2 |
| TC | HRGMv2_0735_90 | HRGMv2_0735_90_5 | 4872 | 5666 | + | 3.A.1.3.10 |
| TC | HRGMv2_0735_90 | HRGMv2_0735_90_6 | 6993 | 7688 | + | 3.A.1.3.15 |
| TC | HRGMv2_0735_90 | HRGMv2_0735_90_7 | 7675 | 8412 | + | 3.A.1.3.25 |
Gene ID: HRGMv2_0735_90_2
Type: CAZyme
Location: 935 - 2053 (-)
Type: CAZyme
Location: 935 - 2053 (-)
Gene ID: HRGMv2_0735_90_3
Type: pfam
Location: 2292 - 3572 (+)
Type: pfam
Location: 2292 - 3572 (+)
Gene ID: HRGMv2_0735_90_4
Type: STP
Location: 3589 - 4743 (+)
Type: STP
Location: 3589 - 4743 (+)
Gene ID: HRGMv2_0735_90_5
Type: TC
Location: 4872 - 5666 (+)
Type: TC
Location: 4872 - 5666 (+)
Gene ID: HRGMv2_0735_90_6
Type: TC
Location: 6993 - 7688 (+)
Type: TC
Location: 6993 - 7688 (+)
Gene ID: HRGMv2_0735_90_7
Type: TC
Location: 7675 - 8412 (+)
Type: TC
Location: 7675 - 8412 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_90_2 | vegetarian > omnivore | 1.06347 | 0.00143 |
| HRGMv2_0735_90_5 | vegetarian > omnivore | 1.57596 | 0.00143 |
| HRGMv2_0735_90_5 | vegetarian > vegan | 1.27738 | 0.00608 |