Cluster: HRGMv2_0735_CGC42
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_06871
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0735_76 | HRGMv2_0735_76_2 | 1231 | 2673 | + | GH43_35 |
| TC | HRGMv2_0735_76 | HRGMv2_0735_76_3 | 2853 | 3674 | - | 3.A.1.15.3 |
| TC | HRGMv2_0735_76 | HRGMv2_0735_76_4 | 3667 | 4368 | - | 3.A.1.15.3 |
| TC | HRGMv2_0735_76 | HRGMv2_0735_76_5 | 4370 | 5320 | - | 3.A.1.15.3 |
| TF | HRGMv2_0735_76 | HRGMv2_0735_76_6 | 5317 | 5748 | - | FUR |
| CAZyme | HRGMv2_0735_76 | HRGMv2_0735_76_7 | 6011 | 7312 | + | GT1 |
| STP | HRGMv2_0735_76 | HRGMv2_0735_76_8 | 7309 | 7545 | + | FeoA |
| TC | HRGMv2_0735_76 | HRGMv2_0735_76_9 | 7667 | 9772 | + | 9.A.8.1.6 |
Gene ID: HRGMv2_0735_76_2
Type: CAZyme
Location: 1231 - 2673 (+)
Type: CAZyme
Location: 1231 - 2673 (+)
Gene ID: HRGMv2_0735_76_3
Type: TC
Location: 2853 - 3674 (-)
Type: TC
Location: 2853 - 3674 (-)
Gene ID: HRGMv2_0735_76_4
Type: TC
Location: 3667 - 4368 (-)
Type: TC
Location: 3667 - 4368 (-)
Gene ID: HRGMv2_0735_76_5
Type: TC
Location: 4370 - 5320 (-)
Type: TC
Location: 4370 - 5320 (-)
Gene ID: HRGMv2_0735_76_6
Type: TF
Location: 5317 - 5748 (-)
Type: TF
Location: 5317 - 5748 (-)
Gene ID: HRGMv2_0735_76_7
Type: CAZyme
Location: 6011 - 7312 (+)
Type: CAZyme
Location: 6011 - 7312 (+)
Gene ID: HRGMv2_0735_76_8
Type: STP
Location: 7309 - 7545 (+)
Type: STP
Location: 7309 - 7545 (+)
Gene ID: HRGMv2_0735_76_9
Type: TC
Location: 7667 - 9772 (+)
Type: TC
Location: 7667 - 9772 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_76_2 | vegetarian > omnivore | 1.33874 | 0.00143 |
| HRGMv2_0735_76_5 | vegetarian > omnivore | 1.01440 | 0.00143 |
| HRGMv2_0735_76_6 | vegetarian > omnivore | 1.57086 | 0.00143 |
| HRGMv2_0735_76_7 | vegetarian > omnivore | 2.38424 | 0.00143 |
| HRGMv2_0735_76_7 | vegetarian > vegan | 1.67961 | 0.00608 |
| HRGMv2_0735_76_8 | vegetarian > omnivore | 1.33248 | 0.00143 |