Cluster: HRGMv2_0735_CGC41
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_00906
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0735_74 | HRGMv2_0735_74_8 | 6667 | 7821 | + | GH179 |
| pfam | HRGMv2_0735_74 | HRGMv2_0735_74_9 | 7848 | 8663 | + | AP_endonuc_2 |
| TF | HRGMv2_0735_74 | HRGMv2_0735_74_10 | 8642 | 9439 | - | HTH_AraC |
| TC | HRGMv2_0735_74 | HRGMv2_0735_74_11 | 9634 | 11046 | + | 2.A.66.1.33 |
Gene ID: HRGMv2_0735_74_8
Type: CAZyme
Location: 6667 - 7821 (+)
Type: CAZyme
Location: 6667 - 7821 (+)
Gene ID: HRGMv2_0735_74_9
Type: pfam
Location: 7848 - 8663 (+)
Type: pfam
Location: 7848 - 8663 (+)
Gene ID: HRGMv2_0735_74_10
Type: TF
Location: 8642 - 9439 (-)
Type: TF
Location: 8642 - 9439 (-)
Gene ID: HRGMv2_0735_74_11
Type: TC
Location: 9634 - 11046 (+)
Type: TC
Location: 9634 - 11046 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_74_10 | vegetarian > omnivore | 1.20946 | 0.00143 |
| HRGMv2_0735_74_11 | vegetarian > omnivore | 1.24559 | 0.00143 |