Cluster: HRGMv2_0735_CGC40
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_00021
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0735_69 | HRGMv2_0735_69_3 | 2247 | 3566 | + | GH4 |
| CAZyme | HRGMv2_0735_69 | HRGMv2_0735_69_4 | 3826 | 5340 | - | CE20 |
| pfam | HRGMv2_0735_69 | HRGMv2_0735_69_5 | 5337 | 7442 | - | Glyco_hydro_101 | DUF5696 |
| TC | HRGMv2_0735_69 | HRGMv2_0735_69_6 | 7635 | 8588 | + | 3.A.1.1.29 |
| TC | HRGMv2_0735_69 | HRGMv2_0735_69_7 | 8614 | 9510 | + | 3.A.1.1.10 |
Gene ID: HRGMv2_0735_69_3
Type: CAZyme
Location: 2247 - 3566 (+)
Type: CAZyme
Location: 2247 - 3566 (+)
Gene ID: HRGMv2_0735_69_4
Type: CAZyme
Location: 3826 - 5340 (-)
Type: CAZyme
Location: 3826 - 5340 (-)
Gene ID: HRGMv2_0735_69_5
Type: pfam
Location: 5337 - 7442 (-)
Type: pfam
Location: 5337 - 7442 (-)
Gene ID: HRGMv2_0735_69_6
Type: TC
Location: 7635 - 8588 (+)
Type: TC
Location: 7635 - 8588 (+)
Gene ID: HRGMv2_0735_69_7
Type: TC
Location: 8614 - 9510 (+)
Type: TC
Location: 8614 - 9510 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.