Cluster: HRGMv2_0735_CGC4
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0735
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0735_2 | HRGMv2_0735_2_32 | 28208 | 29077 | - | 3.A.1.1.25 |
| TC | HRGMv2_0735_2 | HRGMv2_0735_2_33 | 29091 | 29972 | - | 3.A.1.1.25 |
| TC | HRGMv2_0735_2 | HRGMv2_0735_2_34 | 30066 | 31307 | - | 3.A.1.1.25 |
| TF | HRGMv2_0735_2 | HRGMv2_0735_2_35 | 31608 | 32459 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_0735_2 | HRGMv2_0735_2_36 | 32716 | 34104 | + | 2.A.66.1.23 |
| pfam | HRGMv2_0735_2 | HRGMv2_0735_2_37 | 34126 | 34644 | + | Acetyltransf_1 | Acetyltransf_3 | Acetyltransf_7 |
| pfam | HRGMv2_0735_2 | HRGMv2_0735_2_38 | 34685 | 35380 | - | SSB |
| CAZyme | HRGMv2_0735_2 | HRGMv2_0735_2_39 | 35391 | 36278 | - | CE4 |
Gene ID: HRGMv2_0735_2_32
Type: TC
Location: 28208 - 29077 (-)
Type: TC
Location: 28208 - 29077 (-)
Gene ID: HRGMv2_0735_2_33
Type: TC
Location: 29091 - 29972 (-)
Type: TC
Location: 29091 - 29972 (-)
Gene ID: HRGMv2_0735_2_34
Type: TC
Location: 30066 - 31307 (-)
Type: TC
Location: 30066 - 31307 (-)
Gene ID: HRGMv2_0735_2_35
Type: TF
Location: 31608 - 32459 (+)
Type: TF
Location: 31608 - 32459 (+)
Gene ID: HRGMv2_0735_2_36
Type: TC
Location: 32716 - 34104 (+)
Type: TC
Location: 32716 - 34104 (+)
Gene ID: HRGMv2_0735_2_37
Type: pfam
Location: 34126 - 34644 (+)
Type: pfam
Location: 34126 - 34644 (+)
Gene ID: HRGMv2_0735_2_38
Type: pfam
Location: 34685 - 35380 (-)
Type: pfam
Location: 34685 - 35380 (-)
Gene ID: HRGMv2_0735_2_39
Type: CAZyme
Location: 35391 - 36278 (-)
Type: CAZyme
Location: 35391 - 36278 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_2_32 | vegetarian > omnivore | 3.22056 | 0.00143 |
| HRGMv2_0735_2_32 | vegetarian > vegan | 1.18125 | 0.00608 |
| HRGMv2_0735_2_34 | vegetarian > omnivore | 1.71118 | 0.00143 |
| HRGMv2_0735_2_35 | vegetarian > omnivore | 3.48820 | 0.00143 |
| HRGMv2_0735_2_36 | vegetarian > omnivore | 1.50988 | 0.00143 |
| HRGMv2_0735_2_37 | vegetarian > omnivore | 2.50224 | 0.00143 |