Cluster: HRGMv2_0735_CGC37
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_04012
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0735_54 | HRGMv2_0735_54_8 | 5838 | 7244 | + | 3.A.7.19.1 |
| TC | HRGMv2_0735_54 | HRGMv2_0735_54_9 | 7454 | 8305 | - | 3.A.1.1.41 |
| TC | HRGMv2_0735_54 | HRGMv2_0735_54_10 | 8319 | 9203 | - | 3.A.1.1.4 |
| STP | HRGMv2_0735_54 | HRGMv2_0735_54_11 | 9267 | 10508 | - | SBP_bac_1 |
| CAZyme | HRGMv2_0735_54 | HRGMv2_0735_54_12 | 10522 | 12186 | - | GH13_20 |
Gene ID: HRGMv2_0735_54_8
Type: TC
Location: 5838 - 7244 (+)
Type: TC
Location: 5838 - 7244 (+)
Gene ID: HRGMv2_0735_54_9
Type: TC
Location: 7454 - 8305 (-)
Type: TC
Location: 7454 - 8305 (-)
Gene ID: HRGMv2_0735_54_10
Type: TC
Location: 8319 - 9203 (-)
Type: TC
Location: 8319 - 9203 (-)
Gene ID: HRGMv2_0735_54_11
Type: STP
Location: 9267 - 10508 (-)
Type: STP
Location: 9267 - 10508 (-)
Gene ID: HRGMv2_0735_54_12
Type: CAZyme
Location: 10522 - 12186 (-)
Type: CAZyme
Location: 10522 - 12186 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_54_8 | vegetarian > omnivore | 1.32629 | 0.00143 |
| HRGMv2_0735_54_12 | vegetarian > omnivore | 1.46667 | 0.00143 |