Cluster: HRGMv2_0735_CGC35
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0735
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0735_50 | HRGMv2_0735_50_1 | 57 | 1271 | + | 3.A.1.1.44 |
| TC | HRGMv2_0735_50 | HRGMv2_0735_50_2 | 1363 | 2268 | + | 3.A.1.1.28 |
| TC | HRGMv2_0735_50 | HRGMv2_0735_50_3 | 2269 | 3102 | + | 3.A.1.1.28 |
| pfam | HRGMv2_0735_50 | HRGMv2_0735_50_4 | 3083 | 3925 | + | Exo_endo_phos |
| CAZyme | HRGMv2_0735_50 | HRGMv2_0735_50_5 | 4023 | 5696 | + | GH13_31 |
| CAZyme | HRGMv2_0735_50 | HRGMv2_0735_50_6 | 5729 | 7171 | + | GH32 |
| NULL(UNKNOWN) | HRGMv2_0735_50 | HRGMv2_0735_50_7 | 7200 | 7715 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0735_50 | HRGMv2_0735_50_8 | 7720 | 8553 | - | HTH_AraC |
| CAZyme | HRGMv2_0735_50 | HRGMv2_0735_50_9 | 8661 | 10568 | + | GH127 |
| pfam | HRGMv2_0735_50 | HRGMv2_0735_50_10 | 10886 | 13201 | - | Gly_radical | ATP-cone | NRDD |
| TC | HRGMv2_0735_50 | HRGMv2_0735_50_11 | 13535 | 14164 | - | 1.A.62.2.1 |
| pfam | HRGMv2_0735_50 | HRGMv2_0735_50_12 | 14447 | 14806 | + | PemK_toxin |
| TC | HRGMv2_0735_50 | HRGMv2_0735_50_13 | 14803 | 15651 | + | 2.A.115.1.1 |
Gene ID: HRGMv2_0735_50_1
Type: TC
Location: 57 - 1271 (+)
Type: TC
Location: 57 - 1271 (+)
Gene ID: HRGMv2_0735_50_2
Type: TC
Location: 1363 - 2268 (+)
Type: TC
Location: 1363 - 2268 (+)
Gene ID: HRGMv2_0735_50_3
Type: TC
Location: 2269 - 3102 (+)
Type: TC
Location: 2269 - 3102 (+)
Gene ID: HRGMv2_0735_50_4
Type: pfam
Location: 3083 - 3925 (+)
Type: pfam
Location: 3083 - 3925 (+)
Gene ID: HRGMv2_0735_50_5
Type: CAZyme
Location: 4023 - 5696 (+)
Type: CAZyme
Location: 4023 - 5696 (+)
Gene ID: HRGMv2_0735_50_6
Type: CAZyme
Location: 5729 - 7171 (+)
Type: CAZyme
Location: 5729 - 7171 (+)
Gene ID: HRGMv2_0735_50_7
Type:
Location: 7200 - 7715 (+)
Type:
Location: 7200 - 7715 (+)
Gene ID: HRGMv2_0735_50_8
Type: TF
Location: 7720 - 8553 (-)
Type: TF
Location: 7720 - 8553 (-)
Gene ID: HRGMv2_0735_50_9
Type: CAZyme
Location: 8661 - 10568 (+)
Type: CAZyme
Location: 8661 - 10568 (+)
Gene ID: HRGMv2_0735_50_10
Type: pfam
Location: 10886 - 13201 (-)
Type: pfam
Location: 10886 - 13201 (-)
Gene ID: HRGMv2_0735_50_11
Type: TC
Location: 13535 - 14164 (-)
Type: TC
Location: 13535 - 14164 (-)
Gene ID: HRGMv2_0735_50_12
Type: pfam
Location: 14447 - 14806 (+)
Type: pfam
Location: 14447 - 14806 (+)
Gene ID: HRGMv2_0735_50_13
Type: TC
Location: 14803 - 15651 (+)
Type: TC
Location: 14803 - 15651 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_50_1 | vegetarian > omnivore | 1.67149 | 0.00143 |
| HRGMv2_0735_50_2 | vegetarian > omnivore | 1.70303 | 0.00143 |
| HRGMv2_0735_50_3 | vegetarian > omnivore | 2.73701 | 0.00143 |
| HRGMv2_0735_50_3 | vegetarian > vegan | 1.38228 | 0.00608 |
| HRGMv2_0735_50_5 | vegetarian > omnivore | 1.63712 | 0.00143 |
| HRGMv2_0735_50_6 | vegetarian > omnivore | 1.51701 | 0.00143 |
| HRGMv2_0735_50_7 | vegetarian > omnivore | 2.00327 | 0.00143 |
| HRGMv2_0735_50_7 | vegetarian > vegan | 1.45664 | 0.00608 |
| HRGMv2_0735_50_8 | vegetarian > omnivore | 2.65661 | 0.00143 |
| HRGMv2_0735_50_9 | vegetarian > omnivore | 1.95322 | 0.00143 |
| HRGMv2_0735_50_9 | vegetarian > vegan | 1.04373 | 0.00608 |
| HRGMv2_0735_50_13 | vegetarian > omnivore | 1.65931 | 0.00143 |