Cluster: HRGMv2_0735_CGC33
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_03171
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0735_47 | HRGMv2_0735_47_3 | 1485 | 3704 | - | GH2 |
| TC | HRGMv2_0735_47 | HRGMv2_0735_47_4 | 3908 | 4858 | + | 3.A.1.1.10 |
| TC | HRGMv2_0735_47 | HRGMv2_0735_47_5 | 4877 | 5773 | + | 3.A.1.1.29 |
| STP | HRGMv2_0735_47 | HRGMv2_0735_47_6 | 5840 | 7327 | + | SBP_bac_1 |
| pfam | HRGMv2_0735_47 | HRGMv2_0735_47_7 | 7438 | 8730 | + | FAD_binding_2 | GIDA | FAD_oxidored | FAD_oxidored | NAD_binding_8 |
| CAZyme | HRGMv2_0735_47 | HRGMv2_0735_47_8 | 8767 | 10113 | + | GH30_1 |
| CAZyme | HRGMv2_0735_47 | HRGMv2_0735_47_9 | 10264 | 12396 | + | GH3 |
Gene ID: HRGMv2_0735_47_3
Type: CAZyme
Location: 1485 - 3704 (-)
Type: CAZyme
Location: 1485 - 3704 (-)
Gene ID: HRGMv2_0735_47_4
Type: TC
Location: 3908 - 4858 (+)
Type: TC
Location: 3908 - 4858 (+)
Gene ID: HRGMv2_0735_47_5
Type: TC
Location: 4877 - 5773 (+)
Type: TC
Location: 4877 - 5773 (+)
Gene ID: HRGMv2_0735_47_6
Type: STP
Location: 5840 - 7327 (+)
Type: STP
Location: 5840 - 7327 (+)
Gene ID: HRGMv2_0735_47_7
Type: pfam
Location: 7438 - 8730 (+)
Type: pfam
Location: 7438 - 8730 (+)
Gene ID: HRGMv2_0735_47_8
Type: CAZyme
Location: 8767 - 10113 (+)
Type: CAZyme
Location: 8767 - 10113 (+)
Gene ID: HRGMv2_0735_47_9
Type: CAZyme
Location: 10264 - 12396 (+)
Type: CAZyme
Location: 10264 - 12396 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_47_3 | vegetarian > omnivore | 1.97343 | 0.00143 |
| HRGMv2_0735_47_4 | vegetarian > omnivore | 1.77515 | 0.00143 |
| HRGMv2_0735_47_5 | vegetarian > omnivore | 3.67588 | 0.00143 |
| HRGMv2_0735_47_5 | vegetarian > vegan | 1.70533 | 0.00608 |
| HRGMv2_0735_47_6 | vegetarian > omnivore | 3.02605 | 0.00143 |
| HRGMv2_0735_47_6 | vegetarian > vegan | 1.65794 | 0.00608 |
| HRGMv2_0735_47_7 | vegetarian > omnivore | 2.55653 | 0.00143 |
| HRGMv2_0735_47_8 | vegetarian > omnivore | 2.45938 | 0.00143 |
| HRGMv2_0735_47_9 | vegetarian > omnivore | 1.55089 | 0.00143 |