Cluster: HRGMv2_0735_CGC32
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_04506
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0735_41 | HRGMv2_0735_41_6 | 3869 | 5746 | - | 3.A.3.6.16 |
| pfam | HRGMv2_0735_41 | HRGMv2_0735_41_7 | 5859 | 6134 | - | Trns_repr_metal |
| CAZyme | HRGMv2_0735_41 | HRGMv2_0735_41_8 | 6212 | 7471 | - | GH13 |
| CAZyme | HRGMv2_0735_41 | HRGMv2_0735_41_9 | 7453 | 9606 | - | GH31_7 |
| CAZyme | HRGMv2_0735_41 | HRGMv2_0735_41_10 | 9603 | 11945 | - | GH31_15 |
| TC | HRGMv2_0735_41 | HRGMv2_0735_41_11 | 12149 | 13729 | - | 3.A.1.1.29 |
| TC | HRGMv2_0735_41 | HRGMv2_0735_41_12 | 13791 | 14723 | - | 3.A.1.1.10 |
| TC | HRGMv2_0735_41 | HRGMv2_0735_41_13 | 14737 | 15654 | - | 3.A.1.1.10 |
Gene ID: HRGMv2_0735_41_6
Type: TC
Location: 3869 - 5746 (-)
Type: TC
Location: 3869 - 5746 (-)
Gene ID: HRGMv2_0735_41_7
Type: pfam
Location: 5859 - 6134 (-)
Type: pfam
Location: 5859 - 6134 (-)
Gene ID: HRGMv2_0735_41_8
Type: CAZyme
Location: 6212 - 7471 (-)
Type: CAZyme
Location: 6212 - 7471 (-)
Gene ID: HRGMv2_0735_41_9
Type: CAZyme
Location: 7453 - 9606 (-)
Type: CAZyme
Location: 7453 - 9606 (-)
Gene ID: HRGMv2_0735_41_10
Type: CAZyme
Location: 9603 - 11945 (-)
Type: CAZyme
Location: 9603 - 11945 (-)
Gene ID: HRGMv2_0735_41_11
Type: TC
Location: 12149 - 13729 (-)
Type: TC
Location: 12149 - 13729 (-)
Gene ID: HRGMv2_0735_41_12
Type: TC
Location: 13791 - 14723 (-)
Type: TC
Location: 13791 - 14723 (-)
Gene ID: HRGMv2_0735_41_13
Type: TC
Location: 14737 - 15654 (-)
Type: TC
Location: 14737 - 15654 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_41_8 | vegetarian > vegan | 1.03592 | 0.00608 |
| HRGMv2_0735_41_9 | vegetarian > omnivore | 1.48049 | 0.00143 |
| HRGMv2_0735_41_10 | vegetarian > omnivore | 1.40556 | 0.00143 |
| HRGMv2_0735_41_11 | vegetarian > omnivore | 1.18487 | 0.00143 |
| HRGMv2_0735_41_12 | vegetarian > omnivore | 1.49530 | 0.00143 |