Cluster: HRGMv2_0735_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0735
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0735_2 | HRGMv2_0735_2_20 | 14397 | 15959 | - | 9.B.142.3.8 |
| pfam | HRGMv2_0735_2 | HRGMv2_0735_2_21 | 15956 | 16321 | - | DUF1622 |
| pfam | HRGMv2_0735_2 | HRGMv2_0735_2_22 | 16431 | 17603 | + | Radical_SAM | HemN_C |
| CAZyme | HRGMv2_0735_2 | HRGMv2_0735_2_23 | 17667 | 18815 | + | GH177 |
Gene ID: HRGMv2_0735_2_20
Type: TC
Location: 14397 - 15959 (-)
Type: TC
Location: 14397 - 15959 (-)
Gene ID: HRGMv2_0735_2_21
Type: pfam
Location: 15956 - 16321 (-)
Type: pfam
Location: 15956 - 16321 (-)
Gene ID: HRGMv2_0735_2_22
Type: pfam
Location: 16431 - 17603 (+)
Type: pfam
Location: 16431 - 17603 (+)
Gene ID: HRGMv2_0735_2_23
Type: CAZyme
Location: 17667 - 18815 (+)
Type: CAZyme
Location: 17667 - 18815 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_2_20 | vegetarian > omnivore | 2.31957 | 0.00143 |
| HRGMv2_0735_2_21 | vegan > omnivore | 3.55534 | 0.03033 |
| HRGMv2_0735_2_21 | vegetarian > omnivore | 3.51682 | 0.00143 |
| HRGMv2_0735_2_22 | vegetarian > omnivore | 2.87571 | 0.00143 |
| HRGMv2_0735_2_23 | vegetarian > omnivore | 1.93929 | 0.00143 |