Cluster: HRGMv2_0735_CGC28
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_03272
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0735_31 | HRGMv2_0735_31_1 | 463 | 1413 | + | 3.A.1.1.9 |
| TC | HRGMv2_0735_31 | HRGMv2_0735_31_2 | 1430 | 2314 | + | 3.A.1.1.9 |
| TC | HRGMv2_0735_31 | HRGMv2_0735_31_3 | 2321 | 4012 | + | 9.B.33.1.1 |
| TF | HRGMv2_0735_31 | HRGMv2_0735_31_4 | 4019 | 5590 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0735_31 | HRGMv2_0735_31_5 | 6308 | 8731 | + | GH3 |
| CAZyme | HRGMv2_0735_31 | HRGMv2_0735_31_6 | 9088 | 12105 | + | GH3 |
Gene ID: HRGMv2_0735_31_1
Type: TC
Location: 463 - 1413 (+)
Type: TC
Location: 463 - 1413 (+)
Gene ID: HRGMv2_0735_31_2
Type: TC
Location: 1430 - 2314 (+)
Type: TC
Location: 1430 - 2314 (+)
Gene ID: HRGMv2_0735_31_3
Type: TC
Location: 2321 - 4012 (+)
Type: TC
Location: 2321 - 4012 (+)
Gene ID: HRGMv2_0735_31_4
Type: TF
Location: 4019 - 5590 (+)
Type: TF
Location: 4019 - 5590 (+)
Gene ID: HRGMv2_0735_31_5
Type: CAZyme
Location: 6308 - 8731 (+)
Type: CAZyme
Location: 6308 - 8731 (+)
Gene ID: HRGMv2_0735_31_6
Type: CAZyme
Location: 9088 - 12105 (+)
Type: CAZyme
Location: 9088 - 12105 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_31_5 | vegetarian > vegan | 1.93380 | 0.00608 |
| HRGMv2_0735_31_6 | vegetarian > vegan | 1.92085 | 0.00608 |