Cluster: HRGMv2_0735_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_00003
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0735_23 | HRGMv2_0735_23_10 | 10268 | 10918 | + | 9.B.18.1.1 |
| pfam | HRGMv2_0735_23 | HRGMv2_0735_23_11 | 10918 | 11760 | + | 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| CAZyme | HRGMv2_0735_23 | HRGMv2_0735_23_12 | 11757 | 12881 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_0735_23 | HRGMv2_0735_23_13 | 12881 | 14035 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0735_23 | HRGMv2_0735_23_14 | 14011 | 15264 | + | GT4 |
Gene ID: HRGMv2_0735_23_10
Type: TC
Location: 10268 - 10918 (+)
Type: TC
Location: 10268 - 10918 (+)
Gene ID: HRGMv2_0735_23_11
Type: pfam
Location: 10918 - 11760 (+)
Type: pfam
Location: 10918 - 11760 (+)
Gene ID: HRGMv2_0735_23_12
Type: CAZyme
Location: 11757 - 12881 (+)
Type: CAZyme
Location: 11757 - 12881 (+)
Gene ID: HRGMv2_0735_23_13
Type:
Location: 12881 - 14035 (+)
Type:
Location: 12881 - 14035 (+)
Gene ID: HRGMv2_0735_23_14
Type: CAZyme
Location: 14011 - 15264 (+)
Type: CAZyme
Location: 14011 - 15264 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_23_11 | vegetarian > omnivore | 1.03497 | 0.00143 |
| HRGMv2_0735_23_12 | vegetarian > omnivore | 1.78351 | 0.00143 |
| HRGMv2_0735_23_12 | vegetarian > vegan | 1.12557 | 0.00608 |
| HRGMv2_0735_23_13 | vegetarian > omnivore | 1.65629 | 0.00143 |
| HRGMv2_0735_23_14 | vegetarian > omnivore | 2.03882 | 0.00143 |