Cluster: HRGMv2_0735_CGC22
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_08270
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0735_21 | HRGMv2_0735_21_9 | 10834 | 13665 | - | GH38 |
| NULL(UNKNOWN) | HRGMv2_0735_21 | HRGMv2_0735_21_10 | 13766 | 15355 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0735_21 | HRGMv2_0735_21_11 | 15404 | 16321 | - | 3.A.1.1.10 |
| TC | HRGMv2_0735_21 | HRGMv2_0735_21_12 | 16345 | 17298 | - | 3.A.1.1.10 |
| TF | HRGMv2_0735_21 | HRGMv2_0735_21_13 | 17496 | 18614 | + | GntR |
| CAZyme | HRGMv2_0735_21 | HRGMv2_0735_21_14 | 18628 | 19917 | + | GH125 |
Gene ID: HRGMv2_0735_21_9
Type: CAZyme
Location: 10834 - 13665 (-)
Type: CAZyme
Location: 10834 - 13665 (-)
Gene ID: HRGMv2_0735_21_10
Type:
Location: 13766 - 15355 (-)
Type:
Location: 13766 - 15355 (-)
Gene ID: HRGMv2_0735_21_11
Type: TC
Location: 15404 - 16321 (-)
Type: TC
Location: 15404 - 16321 (-)
Gene ID: HRGMv2_0735_21_12
Type: TC
Location: 16345 - 17298 (-)
Type: TC
Location: 16345 - 17298 (-)
Gene ID: HRGMv2_0735_21_13
Type: TF
Location: 17496 - 18614 (+)
Type: TF
Location: 17496 - 18614 (+)
Gene ID: HRGMv2_0735_21_14
Type: CAZyme
Location: 18628 - 19917 (+)
Type: CAZyme
Location: 18628 - 19917 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_21_9 | vegetarian > omnivore | 1.28021 | 0.00143 |
| HRGMv2_0735_21_9 | vegetarian > vegan | 3.33702 | 0.00608 |
| HRGMv2_0735_21_13 | vegetarian > omnivore | 2.05309 | 0.00143 |
| HRGMv2_0735_21_14 | vegetarian > omnivore | 1.41019 | 0.00143 |
| HRGMv2_0735_21_14 | vegetarian > vegan | 1.17515 | 0.00608 |