Cluster: HRGMv2_0735_CGC2
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0735
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0735_1 | HRGMv2_0735_1_16 | 19435 | 23610 | + | GT39 |
| peptidase | HRGMv2_0735_1 | HRGMv2_0735_1_17 | 23638 | 25176 | + | S16.UNW |
| TC | HRGMv2_0735_1 | HRGMv2_0735_1_18 | 25167 | 26279 | + | 3.A.11.1.3 |
Gene ID: HRGMv2_0735_1_16
Type: CAZyme
Location: 19435 - 23610 (+)
Type: CAZyme
Location: 19435 - 23610 (+)
Gene ID: HRGMv2_0735_1_17
Type: peptidase
Location: 23638 - 25176 (+)
Type: peptidase
Location: 23638 - 25176 (+)
Gene ID: HRGMv2_0735_1_18
Type: TC
Location: 25167 - 26279 (+)
Type: TC
Location: 25167 - 26279 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_1_16 | vegetarian > omnivore | 1.52721 | 0.00143 |
| HRGMv2_0735_1_17 | vegetarian > vegan | 1.16314 | 0.00608 |
| HRGMv2_0735_1_18 | vegetarian > omnivore | 2.17387 | 0.00143 |