Cluster: HRGMv2_0735_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_00026
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0735_13 | HRGMv2_0735_13_14 | 13345 | 14277 | + | 3.A.1.1.10 |
| TC | HRGMv2_0735_13 | HRGMv2_0735_13_15 | 14294 | 15208 | + | 3.A.1.1.10 |
| STP | HRGMv2_0735_13 | HRGMv2_0735_13_16 | 15278 | 16924 | + | SBP_bac_1 |
| CAZyme | HRGMv2_0735_13 | HRGMv2_0735_13_17 | 17061 | 19214 | - | GH36 |
| CAZyme | HRGMv2_0735_13 | HRGMv2_0735_13_18 | 19267 | 21309 | - | GH50 |
| TC | HRGMv2_0735_13 | HRGMv2_0735_13_19 | 21542 | 22483 | + | 3.A.1.1.10 |
| TC | HRGMv2_0735_13 | HRGMv2_0735_13_20 | 22503 | 23420 | + | 3.A.1.1.29 |
Gene ID: HRGMv2_0735_13_14
Type: TC
Location: 13345 - 14277 (+)
Type: TC
Location: 13345 - 14277 (+)
Gene ID: HRGMv2_0735_13_15
Type: TC
Location: 14294 - 15208 (+)
Type: TC
Location: 14294 - 15208 (+)
Gene ID: HRGMv2_0735_13_16
Type: STP
Location: 15278 - 16924 (+)
Type: STP
Location: 15278 - 16924 (+)
Gene ID: HRGMv2_0735_13_17
Type: CAZyme
Location: 17061 - 19214 (-)
Type: CAZyme
Location: 17061 - 19214 (-)
Gene ID: HRGMv2_0735_13_18
Type: CAZyme
Location: 19267 - 21309 (-)
Type: CAZyme
Location: 19267 - 21309 (-)
Gene ID: HRGMv2_0735_13_19
Type: TC
Location: 21542 - 22483 (+)
Type: TC
Location: 21542 - 22483 (+)
Gene ID: HRGMv2_0735_13_20
Type: TC
Location: 22503 - 23420 (+)
Type: TC
Location: 22503 - 23420 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_13_14 | vegetarian > omnivore | 2.48794 | 0.00143 |
| HRGMv2_0735_13_15 | vegetarian > omnivore | 2.33496 | 0.00143 |
| HRGMv2_0735_13_16 | vegetarian > omnivore | 2.57436 | 0.00143 |
| HRGMv2_0735_13_16 | vegetarian > vegan | 1.09937 | 0.00608 |
| HRGMv2_0735_13_17 | vegetarian > omnivore | 1.76251 | 0.00143 |
| HRGMv2_0735_13_18 | vegetarian > omnivore | 2.45618 | 0.00143 |
| HRGMv2_0735_13_19 | vegetarian > omnivore | 1.96996 | 0.00143 |
| HRGMv2_0735_13_20 | vegetarian > omnivore | 1.78274 | 0.00143 |