Cluster: HRGMv2_0735_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_01579
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0735_11 | HRGMv2_0735_11_15 | 11839 | 13599 | + | 3.A.2.1.2 |
| TC | HRGMv2_0735_11 | HRGMv2_0735_11_16 | 13606 | 14523 | + | 3.A.2.1.5 |
| TC | HRGMv2_0735_11 | HRGMv2_0735_11_17 | 14520 | 15914 | + | 3.A.2.1.5 |
| pfam | HRGMv2_0735_11 | HRGMv2_0735_11_18 | 15911 | 16321 | + | ATP-synt_DE | ATP-synt_DE_N |
| CAZyme | HRGMv2_0735_11 | HRGMv2_0735_11_19 | 16495 | 18576 | + | GH3 |
Gene ID: HRGMv2_0735_11_15
Type: TC
Location: 11839 - 13599 (+)
Type: TC
Location: 11839 - 13599 (+)
Gene ID: HRGMv2_0735_11_16
Type: TC
Location: 13606 - 14523 (+)
Type: TC
Location: 13606 - 14523 (+)
Gene ID: HRGMv2_0735_11_17
Type: TC
Location: 14520 - 15914 (+)
Type: TC
Location: 14520 - 15914 (+)
Gene ID: HRGMv2_0735_11_18
Type: pfam
Location: 15911 - 16321 (+)
Type: pfam
Location: 15911 - 16321 (+)
Gene ID: HRGMv2_0735_11_19
Type: CAZyme
Location: 16495 - 18576 (+)
Type: CAZyme
Location: 16495 - 18576 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_11_18 | vegetarian > omnivore | 1.83974 | 0.00143 |
| HRGMv2_0735_11_18 | vegetarian > vegan | 2.07153 | 0.00608 |
| HRGMv2_0735_11_19 | vegetarian > omnivore | 2.78345 | 0.00143 |