Cluster: HRGMv2_0735_CGC16
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0735
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0735_10 | HRGMv2_0735_10_16 | 17380 | 18315 | - | 3.A.1.5.19 |
| TC | HRGMv2_0735_10 | HRGMv2_0735_10_17 | 18305 | 19387 | - | 3.A.1.5.25 |
| TC | HRGMv2_0735_10 | HRGMv2_0735_10_18 | 19409 | 20413 | - | 3.A.1.5.19 |
| TC | HRGMv2_0735_10 | HRGMv2_0735_10_19 | 20419 | 21351 | - | 3.A.1.5.19 |
| TC | HRGMv2_0735_10 | HRGMv2_0735_10_20 | 21507 | 23108 | - | 3.A.1.5.19 |
| pfam | HRGMv2_0735_10 | HRGMv2_0735_10_21 | 23407 | 23799 | + | PNPOx_N |
| pfam | HRGMv2_0735_10 | HRGMv2_0735_10_22 | 24043 | 24807 | + | MatE |
| CAZyme | HRGMv2_0735_10 | HRGMv2_0735_10_23 | 24782 | 26344 | + | GH5_4 |
Gene ID: HRGMv2_0735_10_16
Type: TC
Location: 17380 - 18315 (-)
Type: TC
Location: 17380 - 18315 (-)
Gene ID: HRGMv2_0735_10_17
Type: TC
Location: 18305 - 19387 (-)
Type: TC
Location: 18305 - 19387 (-)
Gene ID: HRGMv2_0735_10_18
Type: TC
Location: 19409 - 20413 (-)
Type: TC
Location: 19409 - 20413 (-)
Gene ID: HRGMv2_0735_10_19
Type: TC
Location: 20419 - 21351 (-)
Type: TC
Location: 20419 - 21351 (-)
Gene ID: HRGMv2_0735_10_20
Type: TC
Location: 21507 - 23108 (-)
Type: TC
Location: 21507 - 23108 (-)
Gene ID: HRGMv2_0735_10_21
Type: pfam
Location: 23407 - 23799 (+)
Type: pfam
Location: 23407 - 23799 (+)
Gene ID: HRGMv2_0735_10_22
Type: pfam
Location: 24043 - 24807 (+)
Type: pfam
Location: 24043 - 24807 (+)
Gene ID: HRGMv2_0735_10_23
Type: CAZyme
Location: 24782 - 26344 (+)
Type: CAZyme
Location: 24782 - 26344 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_10_18 | vegetarian > omnivore | 1.63415 | 0.00143 |
| HRGMv2_0735_10_20 | vegetarian > omnivore | 2.90937 | 0.00143 |
| HRGMv2_0735_10_20 | vegetarian > vegan | 4.54799 | 0.00457 |
| HRGMv2_0735_10_22 | vegetarian > vegan | 1.62276 | 0.00608 |
| HRGMv2_0735_10_23 | vegetarian > omnivore | 1.22240 | 0.00143 |
| HRGMv2_0735_10_23 | vegetarian > vegan | 1.05948 | 0.00608 |