Cluster: HRGMv2_0735_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0735
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0735_7 | HRGMv2_0735_7_18 | 22914 | 24929 | + | GH50 |
| pfam | HRGMv2_0735_7 | HRGMv2_0735_7_19 | 24963 | 28142 | + | DUF5107 |
| TC | HRGMv2_0735_7 | HRGMv2_0735_7_20 | 28686 | 29639 | + | 3.A.1.1.10 |
| TC | HRGMv2_0735_7 | HRGMv2_0735_7_21 | 29658 | 30596 | + | 3.A.1.1.10 |
Gene ID: HRGMv2_0735_7_18
Type: CAZyme
Location: 22914 - 24929 (+)
Type: CAZyme
Location: 22914 - 24929 (+)
Gene ID: HRGMv2_0735_7_19
Type: pfam
Location: 24963 - 28142 (+)
Type: pfam
Location: 24963 - 28142 (+)
Gene ID: HRGMv2_0735_7_20
Type: TC
Location: 28686 - 29639 (+)
Type: TC
Location: 28686 - 29639 (+)
Gene ID: HRGMv2_0735_7_21
Type: TC
Location: 29658 - 30596 (+)
Type: TC
Location: 29658 - 30596 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_7_18 | vegetarian > omnivore | 1.80927 | 0.00143 |
| HRGMv2_0735_7_19 | vegetarian > omnivore | 1.82953 | 0.00143 |
| HRGMv2_0735_7_20 | vegetarian > omnivore | 2.02266 | 0.00143 |
| HRGMv2_0735_7_21 | vegetarian > omnivore | 1.87388 | 0.00143 |