Cluster: HRGMv2_0735_CGC12
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0735
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0735_7 | HRGMv2_0735_7_2 | 775 | 1707 | - | 3.A.1.132.9 |
| CAZyme | HRGMv2_0735_7 | HRGMv2_0735_7_3 | 2008 | 3687 | - | GH13_31 |
| TF | HRGMv2_0735_7 | HRGMv2_0735_7_4 | 3684 | 5924 | - | HTH_AraC |
| TC | HRGMv2_0735_7 | HRGMv2_0735_7_5 | 6165 | 7121 | + | 3.A.1.1.10 |
| TC | HRGMv2_0735_7 | HRGMv2_0735_7_6 | 7138 | 8052 | + | 3.A.1.1.29 |
| STP | HRGMv2_0735_7 | HRGMv2_0735_7_7 | 8135 | 9598 | + | SBP_bac_1 |
| CAZyme | HRGMv2_0735_7 | HRGMv2_0735_7_8 | 9686 | 10627 | + | GT108 |
| CAZyme | HRGMv2_0735_7 | HRGMv2_0735_7_9 | 10742 | 11926 | - | GH171 |
| TF | HRGMv2_0735_7 | HRGMv2_0735_7_10 | 11959 | 12837 | - | HTH_6 |
| NULL(UNKNOWN) | HRGMv2_0735_7 | HRGMv2_0735_7_11 | 13103 | 14533 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0735_7 | HRGMv2_0735_7_12 | 14579 | 15988 | + | GH39 |
Gene ID: HRGMv2_0735_7_2
Type: TC
Location: 775 - 1707 (-)
Type: TC
Location: 775 - 1707 (-)
Gene ID: HRGMv2_0735_7_3
Type: CAZyme
Location: 2008 - 3687 (-)
Type: CAZyme
Location: 2008 - 3687 (-)
Gene ID: HRGMv2_0735_7_4
Type: TF
Location: 3684 - 5924 (-)
Type: TF
Location: 3684 - 5924 (-)
Gene ID: HRGMv2_0735_7_5
Type: TC
Location: 6165 - 7121 (+)
Type: TC
Location: 6165 - 7121 (+)
Gene ID: HRGMv2_0735_7_6
Type: TC
Location: 7138 - 8052 (+)
Type: TC
Location: 7138 - 8052 (+)
Gene ID: HRGMv2_0735_7_7
Type: STP
Location: 8135 - 9598 (+)
Type: STP
Location: 8135 - 9598 (+)
Gene ID: HRGMv2_0735_7_8
Type: CAZyme
Location: 9686 - 10627 (+)
Type: CAZyme
Location: 9686 - 10627 (+)
Gene ID: HRGMv2_0735_7_9
Type: CAZyme
Location: 10742 - 11926 (-)
Type: CAZyme
Location: 10742 - 11926 (-)
Gene ID: HRGMv2_0735_7_10
Type: TF
Location: 11959 - 12837 (-)
Type: TF
Location: 11959 - 12837 (-)
Gene ID: HRGMv2_0735_7_11
Type:
Location: 13103 - 14533 (+)
Type:
Location: 13103 - 14533 (+)
Gene ID: HRGMv2_0735_7_12
Type: CAZyme
Location: 14579 - 15988 (+)
Type: CAZyme
Location: 14579 - 15988 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_7_3 | vegetarian > omnivore | 1.31023 | 0.00143 |
| HRGMv2_0735_7_4 | vegetarian > omnivore | 2.96640 | 0.00143 |
| HRGMv2_0735_7_5 | vegetarian > omnivore | 3.16683 | 0.00143 |
| HRGMv2_0735_7_6 | vegetarian > omnivore | 2.05508 | 0.00143 |
| HRGMv2_0735_7_6 | vegetarian > vegan | 1.44432 | 0.00608 |
| HRGMv2_0735_7_7 | vegetarian > omnivore | 2.66593 | 0.00143 |
| HRGMv2_0735_7_8 | vegetarian > omnivore | 4.15202 | 0.00143 |
| HRGMv2_0735_7_8 | vegetarian > vegan | 1.33750 | 0.00608 |
| HRGMv2_0735_7_9 | vegetarian > omnivore | 1.78169 | 0.00143 |
| HRGMv2_0735_7_10 | vegetarian > omnivore | 2.29416 | 0.00143 |
| HRGMv2_0735_7_11 | vegetarian > omnivore | 1.24609 | 0.00143 |
| HRGMv2_0735_7_12 | vegetarian > omnivore | 1.87834 | 0.00143 |