Cluster: HRGMv2_0735_CGC10
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_02362
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0735_6 | HRGMv2_0735_6_6 | 5559 | 6284 | + | 8.A.3.2.2 |
| pfam | HRGMv2_0735_6 | HRGMv2_0735_6_7 | 6302 | 6994 | + | CpsB_CapC |
| TC | HRGMv2_0735_6 | HRGMv2_0735_6_8 | 7082 | 8458 | + | 9.B.18.1.2 |
| CAZyme | HRGMv2_0735_6 | HRGMv2_0735_6_9 | 8504 | 9265 | + | GT2 |
| CAZyme | HRGMv2_0735_6 | HRGMv2_0735_6_10 | 9308 | 10168 | + | GT14 |
| pfam | HRGMv2_0735_6 | HRGMv2_0735_6_11 | 10170 | 11492 | + | Glyco_trans_1_2 |
| CAZyme | HRGMv2_0735_6 | HRGMv2_0735_6_12 | 11473 | 12684 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_0735_6 | HRGMv2_0735_6_13 | 12701 | 13906 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0735_6 | HRGMv2_0735_6_14 | 14011 | 15093 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_0735_6 | HRGMv2_0735_6_15 | 15107 | 15640 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0735_6 | HRGMv2_0735_6_16 | 15612 | 16892 | + | 2.A.66.2.10 |
| TC | HRGMv2_0735_6 | HRGMv2_0735_6_17 | 16906 | 17952 | + | 9.B.18.2.1 |
| CAZyme | HRGMv2_0735_6 | HRGMv2_0735_6_18 | 17971 | 19032 | + | GT14 |
Gene ID: HRGMv2_0735_6_6
Type: TC
Location: 5559 - 6284 (+)
Type: TC
Location: 5559 - 6284 (+)
Gene ID: HRGMv2_0735_6_7
Type: pfam
Location: 6302 - 6994 (+)
Type: pfam
Location: 6302 - 6994 (+)
Gene ID: HRGMv2_0735_6_8
Type: TC
Location: 7082 - 8458 (+)
Type: TC
Location: 7082 - 8458 (+)
Gene ID: HRGMv2_0735_6_9
Type: CAZyme
Location: 8504 - 9265 (+)
Type: CAZyme
Location: 8504 - 9265 (+)
Gene ID: HRGMv2_0735_6_10
Type: CAZyme
Location: 9308 - 10168 (+)
Type: CAZyme
Location: 9308 - 10168 (+)
Gene ID: HRGMv2_0735_6_11
Type: pfam
Location: 10170 - 11492 (+)
Type: pfam
Location: 10170 - 11492 (+)
Gene ID: HRGMv2_0735_6_12
Type: CAZyme
Location: 11473 - 12684 (+)
Type: CAZyme
Location: 11473 - 12684 (+)
Gene ID: HRGMv2_0735_6_13
Type:
Location: 12701 - 13906 (+)
Type:
Location: 12701 - 13906 (+)
Gene ID: HRGMv2_0735_6_14
Type: CAZyme
Location: 14011 - 15093 (+)
Type: CAZyme
Location: 14011 - 15093 (+)
Gene ID: HRGMv2_0735_6_15
Type:
Location: 15107 - 15640 (+)
Type:
Location: 15107 - 15640 (+)
Gene ID: HRGMv2_0735_6_16
Type: TC
Location: 15612 - 16892 (+)
Type: TC
Location: 15612 - 16892 (+)
Gene ID: HRGMv2_0735_6_17
Type: TC
Location: 16906 - 17952 (+)
Type: TC
Location: 16906 - 17952 (+)
Gene ID: HRGMv2_0735_6_18
Type: CAZyme
Location: 17971 - 19032 (+)
Type: CAZyme
Location: 17971 - 19032 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_6_6 | vegetarian > omnivore | 1.04604 | 0.00143 |
| HRGMv2_0735_6_7 | vegetarian > omnivore | 2.85121 | 0.00143 |
| HRGMv2_0735_6_8 | vegetarian > omnivore | 1.97811 | 0.00143 |
| HRGMv2_0735_6_9 | vegetarian > omnivore | 2.86099 | 0.00143 |
| HRGMv2_0735_6_10 | vegetarian > omnivore | 1.83173 | 0.00143 |
| HRGMv2_0735_6_15 | vegetarian > omnivore | 2.02304 | 0.00143 |
| HRGMv2_0735_6_16 | vegetarian > omnivore | 1.95692 | 0.00143 |
| HRGMv2_0735_6_18 | vegetarian > omnivore | 3.13204 | 0.00143 |