Cluster: HRGMv2_0735_CGC1
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0735
- CGC Family ID: CGCFAM_00103
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0735_1 | HRGMv2_0735_1_9 | 10408 | 11619 | + | 3.A.1.1.34 |
| TC | HRGMv2_0735_1 | HRGMv2_0735_1_10 | 11624 | 12508 | + | 3.A.1.1.34 |
| CAZyme | HRGMv2_0735_1 | HRGMv2_0735_1_11 | 12541 | 14049 | + | GH51_1 |
Gene ID: HRGMv2_0735_1_9
Type: TC
Location: 10408 - 11619 (+)
Type: TC
Location: 10408 - 11619 (+)
Gene ID: HRGMv2_0735_1_10
Type: TC
Location: 11624 - 12508 (+)
Type: TC
Location: 11624 - 12508 (+)
Gene ID: HRGMv2_0735_1_11
Type: CAZyme
Location: 12541 - 14049 (+)
Type: CAZyme
Location: 12541 - 14049 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900548145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0735_1_9 | vegetarian > omnivore | 1.90198 | 0.00143 |
| HRGMv2_0735_1_10 | vegetarian > omnivore | 2.07287 | 0.00143 |