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Cluster: HRGMv2_0729_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0729_4 HRGMv2_0729_4_7 7891 9585 + GH2
NULL(UNKNOWN) HRGMv2_0729_4 HRGMv2_0729_4_8 9609 11357 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0729_4 HRGMv2_0729_4_9 11372 12295 + BPD_transp_1
TC HRGMv2_0729_4 HRGMv2_0729_4_10 12314 13210 + 3.A.1.1.6
NULL(UNKNOWN) HRGMv2_0729_4 HRGMv2_0729_4_11 13249 16254 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0729_4 HRGMv2_0729_4_12 16272 18272 + GH163
pfam HRGMv2_0729_4 HRGMv2_0729_4_13 18313 25503 + Big_2
TC HRGMv2_0729_4 HRGMv2_0729_4_14 26003 27682 - 1.A.26.1.1
pfam HRGMv2_0729_4 HRGMv2_0729_4_15 28192 31290 + SNF2-rel_dom | Helicase_C | SWIM | ResIII | SNF2_assoc
TC HRGMv2_0729_4 HRGMv2_0729_4_16 31703 32749 + 2.A.115.1.5
Gene ID: HRGMv2_0729_4_7
Type: CAZyme
Location: 7891 - 9585 (+)
Gene ID: HRGMv2_0729_4_8
Type:
Location: 9609 - 11357 (+)
Gene ID: HRGMv2_0729_4_9
Type: pfam
Location: 11372 - 12295 (+)
Gene ID: HRGMv2_0729_4_10
Type: TC
Location: 12314 - 13210 (+)
Gene ID: HRGMv2_0729_4_11
Type:
Location: 13249 - 16254 (+)
Gene ID: HRGMv2_0729_4_12
Type: CAZyme
Location: 16272 - 18272 (+)
Gene ID: HRGMv2_0729_4_13
Type: pfam
Location: 18313 - 25503 (+)
Gene ID: HRGMv2_0729_4_14
Type: TC
Location: 26003 - 27682 (-)
Gene ID: HRGMv2_0729_4_15
Type: pfam
Location: 28192 - 31290 (+)
Gene ID: HRGMv2_0729_4_16
Type: TC
Location: 31703 - 32749 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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