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Cluster: HRGMv2_0721_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0721_9 HRGMv2_0721_9_2 1506 2357 - GH16
pfam HRGMv2_0721_9 HRGMv2_0721_9_3 2397 3557 - MR_MLE_N | MR_MLE_C
TF HRGMv2_0721_9 HRGMv2_0721_9_4 3751 4587 + HTH_AraC | HTH_AraC
TC HRGMv2_0721_9 HRGMv2_0721_9_5 5217 7265 - 3.A.1.135.6
TC HRGMv2_0721_9 HRGMv2_0721_9_6 7262 9025 - 3.A.1.135.6
TF HRGMv2_0721_9 HRGMv2_0721_9_7 9018 9476 - MarR
STP HRGMv2_0721_9 HRGMv2_0721_9_8 9707 11593 - HATPase_c
CAZyme HRGMv2_0721_9 HRGMv2_0721_9_9 11819 13810 - CBM67 | GH78
CAZyme HRGMv2_0721_9 HRGMv2_0721_9_10 14112 16970 - GH2
Gene ID: HRGMv2_0721_9_2
Type: CAZyme
Location: 1506 - 2357 (-)
Gene ID: HRGMv2_0721_9_3
Type: pfam
Location: 2397 - 3557 (-)
Gene ID: HRGMv2_0721_9_4
Type: TF
Location: 3751 - 4587 (+)
Gene ID: HRGMv2_0721_9_5
Type: TC
Location: 5217 - 7265 (-)
Gene ID: HRGMv2_0721_9_6
Type: TC
Location: 7262 - 9025 (-)
Gene ID: HRGMv2_0721_9_7
Type: TF
Location: 9018 - 9476 (-)
Gene ID: HRGMv2_0721_9_8
Type: STP
Location: 9707 - 11593 (-)
Gene ID: HRGMv2_0721_9_9
Type: CAZyme
Location: 11819 - 13810 (-)
Gene ID: HRGMv2_0721_9_10
Type: CAZyme
Location: 14112 - 16970 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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