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Cluster: HRGMv2_0721_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0721_21 HRGMv2_0721_21_18 17464 18426 + 3.A.1.1.49
TC HRGMv2_0721_21 HRGMv2_0721_21_19 18438 19328 + 3.A.1.1.11
CAZyme HRGMv2_0721_21 HRGMv2_0721_21_20 19473 21365 + GH43
NULL(UNKNOWN) HRGMv2_0721_21 HRGMv2_0721_21_21 21379 27954 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_0721_21 HRGMv2_0721_21_22 28245 29129 - HTH_AraC
CAZyme HRGMv2_0721_21 HRGMv2_0721_21_23 29359 30420 + GH179
NULL(UNKNOWN) HRGMv2_0721_21 HRGMv2_0721_21_24 30417 31265 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0721_21 HRGMv2_0721_21_25 31383 32237 + AP_endonuc_2
TC HRGMv2_0721_21 HRGMv2_0721_21_26 32295 32528 - 2.A.36.2.1
TC HRGMv2_0721_21 HRGMv2_0721_21_27 33336 34244 - 9.A.40.2.1
Gene ID: HRGMv2_0721_21_18
Type: TC
Location: 17464 - 18426 (+)
Gene ID: HRGMv2_0721_21_19
Type: TC
Location: 18438 - 19328 (+)
Gene ID: HRGMv2_0721_21_20
Type: CAZyme
Location: 19473 - 21365 (+)
Gene ID: HRGMv2_0721_21_21
Type:
Location: 21379 - 27954 (+)
Gene ID: HRGMv2_0721_21_22
Type: TF
Location: 28245 - 29129 (-)
Gene ID: HRGMv2_0721_21_23
Type: CAZyme
Location: 29359 - 30420 (+)
Gene ID: HRGMv2_0721_21_24
Type:
Location: 30417 - 31265 (+)
Gene ID: HRGMv2_0721_21_25
Type: pfam
Location: 31383 - 32237 (+)
Gene ID: HRGMv2_0721_21_26
Type: TC
Location: 32295 - 32528 (-)
Gene ID: HRGMv2_0721_21_27
Type: TC
Location: 33336 - 34244 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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