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Cluster: HRGMv2_0720_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0720_19 HRGMv2_0720_19_11 10934 12100 - CE9
NULL(UNKNOWN) HRGMv2_0720_19 HRGMv2_0720_19_12 12097 12915 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0720_19 HRGMv2_0720_19_13 12918 14189 - PGI
TC HRGMv2_0720_19 HRGMv2_0720_19_14 14253 15323 - 3.A.1.17.12
pfam HRGMv2_0720_19 HRGMv2_0720_19_15 15376 16281 - AP_endonuc_2
CAZyme HRGMv2_0720_19 HRGMv2_0720_19_16 16278 17324 - GH179
TC HRGMv2_0720_19 HRGMv2_0720_19_17 17348 18205 - 3.A.1.16.3
TC HRGMv2_0720_19 HRGMv2_0720_19_18 18222 19073 - 3.A.1.16.4
TF HRGMv2_0720_19 HRGMv2_0720_19_19 19362 20132 + HTH_DeoR
TC HRGMv2_0720_19 HRGMv2_0720_19_20 20360 21142 + 2.A.102.4.4
STP HRGMv2_0720_19 HRGMv2_0720_19_21 21336 22424 + Fer4
TC HRGMv2_0720_19 HRGMv2_0720_19_22 22421 23407 + 9.B.10.1.1
pfam HRGMv2_0720_19 HRGMv2_0720_19_23 24053 25180 + DUF4317
pfam HRGMv2_0720_19 HRGMv2_0720_19_24 25313 25690 - Ribonuc_L-PSP
TC HRGMv2_0720_19 HRGMv2_0720_19_25 26147 27559 + 2.A.66.1.25
Gene ID: HRGMv2_0720_19_11
Type: CAZyme
Location: 10934 - 12100 (-)
Gene ID: HRGMv2_0720_19_12
Type:
Location: 12097 - 12915 (-)
Gene ID: HRGMv2_0720_19_13
Type: pfam
Location: 12918 - 14189 (-)
Gene ID: HRGMv2_0720_19_14
Type: TC
Location: 14253 - 15323 (-)
Gene ID: HRGMv2_0720_19_15
Type: pfam
Location: 15376 - 16281 (-)
Gene ID: HRGMv2_0720_19_16
Type: CAZyme
Location: 16278 - 17324 (-)
Gene ID: HRGMv2_0720_19_17
Type: TC
Location: 17348 - 18205 (-)
Gene ID: HRGMv2_0720_19_18
Type: TC
Location: 18222 - 19073 (-)
Gene ID: HRGMv2_0720_19_19
Type: TF
Location: 19362 - 20132 (+)
Gene ID: HRGMv2_0720_19_20
Type: TC
Location: 20360 - 21142 (+)
Gene ID: HRGMv2_0720_19_21
Type: STP
Location: 21336 - 22424 (+)
Gene ID: HRGMv2_0720_19_22
Type: TC
Location: 22421 - 23407 (+)
Gene ID: HRGMv2_0720_19_23
Type: pfam
Location: 24053 - 25180 (+)
Gene ID: HRGMv2_0720_19_24
Type: pfam
Location: 25313 - 25690 (-)
Gene ID: HRGMv2_0720_19_25
Type: TC
Location: 26147 - 27559 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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