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Cluster: HRGMv2_0720_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0720_5 HRGMv2_0720_5_47 57012 57761 - GT2
TC HRGMv2_0720_5 HRGMv2_0720_5_48 57758 59164 - 9.B.18.1.3
STP HRGMv2_0720_5 HRGMv2_0720_5_49 59359 60480 - Fer4
TF HRGMv2_0720_5 HRGMv2_0720_5_50 60491 61519 - LacI
TC HRGMv2_0720_5 HRGMv2_0720_5_51 61898 63178 + 2.A.39.1.1
pfam HRGMv2_0720_5 HRGMv2_0720_5_52 63565 64908 + ELFV_dehydrog | ELFV_dehydrog_N
TF HRGMv2_0720_5 HRGMv2_0720_5_53 65122 65718 - HTH_3
TC HRGMv2_0720_5 HRGMv2_0720_5_54 66060 68714 + 3.A.3.2.21
pfam HRGMv2_0720_5 HRGMv2_0720_5_55 69821 70408 - Acetyltransf_1 | FR47 | Acetyltransf_7 | Acetyltransf_9 | Acetyltransf_10
CAZyme HRGMv2_0720_5 HRGMv2_0720_5_56 70405 72159 - GH2
TC HRGMv2_0720_5 HRGMv2_0720_5_57 72137 73429 - 2.A.1.84.3
TC HRGMv2_0720_5 HRGMv2_0720_5_58 73450 74631 - 2.A.4.7.4
Gene ID: HRGMv2_0720_5_47
Type: CAZyme
Location: 57012 - 57761 (-)
Gene ID: HRGMv2_0720_5_48
Type: TC
Location: 57758 - 59164 (-)
Gene ID: HRGMv2_0720_5_49
Type: STP
Location: 59359 - 60480 (-)
Gene ID: HRGMv2_0720_5_50
Type: TF
Location: 60491 - 61519 (-)
Gene ID: HRGMv2_0720_5_51
Type: TC
Location: 61898 - 63178 (+)
Gene ID: HRGMv2_0720_5_52
Type: pfam
Location: 63565 - 64908 (+)
Gene ID: HRGMv2_0720_5_53
Type: TF
Location: 65122 - 65718 (-)
Gene ID: HRGMv2_0720_5_54
Type: TC
Location: 66060 - 68714 (+)
Gene ID: HRGMv2_0720_5_55
Type: pfam
Location: 69821 - 70408 (-)
Gene ID: HRGMv2_0720_5_56
Type: CAZyme
Location: 70405 - 72159 (-)
Gene ID: HRGMv2_0720_5_57
Type: TC
Location: 72137 - 73429 (-)
Gene ID: HRGMv2_0720_5_58
Type: TC
Location: 73450 - 74631 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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