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Cluster: HRGMv2_0720_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0720_3 HRGMv2_0720_3_12 8971 11352 + GH94
pfam HRGMv2_0720_3 HRGMv2_0720_3_13 11370 12782 + PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
TC HRGMv2_0720_3 HRGMv2_0720_3_14 12850 14574 + 8.A.59.2.1
STP HRGMv2_0720_3 HRGMv2_0720_3_15 14678 16030 + SBP_bac_1
TC HRGMv2_0720_3 HRGMv2_0720_3_16 16135 17061 + 3.A.1.1.20
TC HRGMv2_0720_3 HRGMv2_0720_3_17 17075 17929 + 3.A.1.1.18
TF HRGMv2_0720_3 HRGMv2_0720_3_18 17964 18698 + HTH_AraC | HTH_AraC
pfam HRGMv2_0720_3 HRGMv2_0720_3_19 18784 20163 + ROK
CAZyme HRGMv2_0720_3 HRGMv2_0720_3_20 20174 21313 + CE9
pfam HRGMv2_0720_3 HRGMv2_0720_3_21 21512 22321 + PBP_like | PBP_like_2 | SBP_bac_11
TC HRGMv2_0720_3 HRGMv2_0720_3_22 22388 23257 + 3.A.1.7.1
TC HRGMv2_0720_3 HRGMv2_0720_3_23 23260 24123 + 3.A.1.7.2
TC HRGMv2_0720_3 HRGMv2_0720_3_24 24120 24875 + 3.A.1.7.5
Gene ID: HRGMv2_0720_3_12
Type: CAZyme
Location: 8971 - 11352 (+)
Gene ID: HRGMv2_0720_3_13
Type: pfam
Location: 11370 - 12782 (+)
Gene ID: HRGMv2_0720_3_14
Type: TC
Location: 12850 - 14574 (+)
Gene ID: HRGMv2_0720_3_15
Type: STP
Location: 14678 - 16030 (+)
Gene ID: HRGMv2_0720_3_16
Type: TC
Location: 16135 - 17061 (+)
Gene ID: HRGMv2_0720_3_17
Type: TC
Location: 17075 - 17929 (+)
Gene ID: HRGMv2_0720_3_18
Type: TF
Location: 17964 - 18698 (+)
Gene ID: HRGMv2_0720_3_19
Type: pfam
Location: 18784 - 20163 (+)
Gene ID: HRGMv2_0720_3_20
Type: CAZyme
Location: 20174 - 21313 (+)
Gene ID: HRGMv2_0720_3_21
Type: pfam
Location: 21512 - 22321 (+)
Gene ID: HRGMv2_0720_3_22
Type: TC
Location: 22388 - 23257 (+)
Gene ID: HRGMv2_0720_3_23
Type: TC
Location: 23260 - 24123 (+)
Gene ID: HRGMv2_0720_3_24
Type: TC
Location: 24120 - 24875 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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