Cluster: HRGMv2_0719_CGC4
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0719
- CGC Family ID: CGCFAM_03246
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0719_1 | HRGMv2_0719_1_86 | 100114 | 102369 | - | GH43_33 |
| TC | HRGMv2_0719_1 | HRGMv2_0719_1_87 | 102678 | 103559 | - | 3.A.1.1.8 |
| TC | HRGMv2_0719_1 | HRGMv2_0719_1_88 | 103576 | 104595 | - | 3.A.1.1.4 |
Gene ID: HRGMv2_0719_1_86
Type: CAZyme
Location: 100114 - 102369 (-)
Type: CAZyme
Location: 100114 - 102369 (-)
Gene ID: HRGMv2_0719_1_87
Type: TC
Location: 102678 - 103559 (-)
Type: TC
Location: 102678 - 103559 (-)
Gene ID: HRGMv2_0719_1_88
Type: TC
Location: 103576 - 104595 (-)
Type: TC
Location: 103576 - 104595 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
UBA10677
Species
UBA10677 sp900762945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0719_1_86 | vegetarian > omnivore | 2.35670 | 0.02785 |
| HRGMv2_0719_1_86 | vegetarian > vegan | 1.00863 | 0.00565 |
| HRGMv2_0719_1_88 | vegetarian > omnivore | 1.83145 | 0.02785 |